- PDB-1x9v: Dimeric structure of the C-terminal domain of Vpr -
+
データを開く
IDまたはキーワード:
読み込み中...
-
基本情報
登録情報
データベース: PDB / ID: 1x9v
タイトル
Dimeric structure of the C-terminal domain of Vpr
要素
VPR protein
キーワード
VIRAL PROTEIN / alpha helix / antiparallel homodimer / leucine-zipper
機能・相同性
機能・相同性情報
symbiont-mediated arrest of host cell cycle during G2/M transition / monoatomic ion transmembrane transport / virion component / protein homooligomerization / viral penetration into host nucleus / host cell / host extracellular space / symbiont entry into host cell / cell cycle / DNA-templated transcription ...symbiont-mediated arrest of host cell cycle during G2/M transition / monoatomic ion transmembrane transport / virion component / protein homooligomerization / viral penetration into host nucleus / host cell / host extracellular space / symbiont entry into host cell / cell cycle / DNA-templated transcription / host cell nucleus / regulation of DNA-templated transcription 類似検索 - 分子機能
VpR/VpX protein, C-terminal domain / Retroviral VpR/VpX protein / VPR/VPX protein / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Up-down Bundle / Mainly Alpha 類似検索 - ドメイン・相同性
structures with the lowest energy, structures with the least restraint violations
代表モデル
モデル #1
lowest energy
-
要素
#1: タンパク質・ペプチド
VPRprotein / viral protein R
分子量: 5257.138 Da / 分子数: 2 / 断片: C-terminal domain (residues 52-96) / 由来タイプ: 合成 詳細: The peptide was chemically synthesized by solid phase. The sequence of the peptide is found in Human immunodeficiency virus type 1 (HIV-1) 参照: UniProt: Q73369
タイプ: Bruker AVANCE / 製造業者: Bruker / モデル: AVANCE / 磁場強度: 600 MHz
-
解析
NMR software
名称
バージョン
開発者
分類
XwinNMR
3
Bruker
collection
XwinNMR
3
Bruker
解析
Felix
98
Accelrys
データ解析
X-PLOR
3.851
精密化
精密化
手法: restrained simulated annealing, molecular dynamics, energy minimization ソフトェア番号: 1 詳細: the structures are based on 573 NOE-derived distance constraints.
代表構造
選択基準: lowest energy
NMRアンサンブル
コンフォーマー選択の基準: structures with the lowest energy, structures with the least restraint violations 計算したコンフォーマーの数: 100 / 登録したコンフォーマーの数: 10