登録情報 | データベース: PDB / ID: 1wyu |
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タイトル | Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in holo form |
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要素 | - glycine dehydrogenase (decarboxylating) subunit 1
- glycine dehydrogenase subunit 2 (P-protein)
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キーワード | OXIDOREDUCTASE / ALPHA(2)BETA(2) TETRAMER / RIKEN Structural Genomics/Proteomics Initiative / RSGI / Structural Genomics |
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機能・相同性 | 機能・相同性情報
glycine dehydrogenase (aminomethyl-transferring) / glycine dehydrogenase (decarboxylating) activity / glycine decarboxylation via glycine cleavage system / glycine cleavage complex / nucleoside metabolic process / glycine binding / pyridoxal phosphate binding / cytosol類似検索 - 分子機能 Translocated Intimin Receptor; Chain T / Translocated Intimin Receptor; Chain T - #10 / Probable glycine dehydrogenase (decarboxylating) subunit 1 / Probable glycine dehydrogenase (decarboxylating) subunit 2 / Glycine cleavage system P protein / : / : / Glycine cleavage system P-protein / Glycine dehydrogenase, C-terminal domain / Other non-globular ...Translocated Intimin Receptor; Chain T / Translocated Intimin Receptor; Chain T - #10 / Probable glycine dehydrogenase (decarboxylating) subunit 1 / Probable glycine dehydrogenase (decarboxylating) subunit 2 / Glycine cleavage system P protein / : / : / Glycine cleavage system P-protein / Glycine dehydrogenase, C-terminal domain / Other non-globular / Aspartate Aminotransferase, domain 1 / Aspartate Aminotransferase, domain 1 / Aspartate Aminotransferase; domain 2 / Type I PLP-dependent aspartate aminotransferase-like (Major domain) / Pyridoxal phosphate-dependent transferase, small domain / Special / Pyridoxal phosphate-dependent transferase, major domain / Pyridoxal phosphate-dependent transferase / Alpha-Beta Complex / 3-Layer(aba) Sandwich / Alpha Beta類似検索 - ドメイン・相同性 PYRIDOXAL-5'-PHOSPHATE / Probable glycine dehydrogenase (decarboxylating) subunit 2 / Probable glycine dehydrogenase (decarboxylating) subunit 1類似検索 - 構成要素 |
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生物種 |  Thermus thermophilus (バクテリア) |
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手法 | X線回折 / シンクロトロン / 単一同系置換 / 解像度: 2.1 Å |
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データ登録者 | Nakai, T. / Nakagawa, N. / Maoka, N. / Masui, R. / Kuramitsu, S. / Kamiya, N. / RIKEN Structural Genomics/Proteomics Initiative (RSGI) |
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引用 | ジャーナル: Embo J. / 年: 2005 タイトル: Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia 著者: Nakai, T. / Nakagawa, N. / Maoka, N. / Masui, R. / Kuramitsu, S. / Kamiya, N. |
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履歴 | 登録 | 2005年2月17日 | 登録サイト: PDBJ / 処理サイト: PDBJ |
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改定 1.0 | 2005年4月5日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2008年4月30日 | Group: Version format compliance |
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改定 1.2 | 2011年7月13日 | Group: Source and taxonomy / Version format compliance |
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改定 1.3 | 2025年3月26日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Structure summary カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / struct_conn / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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