+Open data
-Basic information
Entry | Database: PDB / ID: 1whp | ||||||
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Title | ALLERGEN PHL P 2 | ||||||
Components | ALLERGEN PHL P 2 | ||||||
Keywords | ALLERGEN / TIMOTHY GRASS POLLEN ALLERGEN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Phleum pratense (timothy grass) | ||||||
Method | X-RAY DIFFRACTION / molecular replacement / Resolution: 3 Å | ||||||
Authors | Fedorov, A.A. / Fedorov, E.V. / Dolecek, C. / Susani, M. / Valenta, R. / Almo, S.C. | ||||||
Citation | Journal: To be Published Title: Crystal Structure of Phl P 2, a Major Timothy Grass (Phleum Pratense) Pollen Allergen Authors: Fedorov, A.A. / Fedorov, E.V. / Dolecek, C. / Susani, M. / Valenta, R. / Almo, S.C. #1: Journal: FEBS Lett. / Year: 1993 Title: Molecular Characterization of Phl P II, a Major Timothy Grass (Phleum Pratense) Pollen Allergen Authors: Dolecek, C. / Vrtala, S. / Laffer, S. / Steinberger, P. / Kraft, D. / Scheiner, O. / Valenta, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1whp.cif.gz | 28.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1whp.ent.gz | 18.7 KB | Display | PDB format |
PDBx/mmJSON format | 1whp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1whp_validation.pdf.gz | 360.6 KB | Display | wwPDB validaton report |
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Full document | 1whp_full_validation.pdf.gz | 360.6 KB | Display | |
Data in XML | 1whp_validation.xml.gz | 3.1 KB | Display | |
Data in CIF | 1whp_validation.cif.gz | 4.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/wh/1whp ftp://data.pdbj.org/pub/pdb/validation_reports/wh/1whp | HTTPS FTP |
-Related structure data
Related structure data | 1whoSC S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 10828.056 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Phleum pratense (timothy grass) / Production host: Escherichia coli (E. coli) / References: UniProt: P43214 |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.25 Å3/Da / Density % sol: 46 % |
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Crystal grow | pH: 4.6 / Details: CRYSTALLIZED FROM 24% PEG 4000 SOLUTION., pH 4.6 |
-Data collection
Diffraction | Mean temperature: 290 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU RUH2R / Wavelength: 1.5418 |
Detector | Type: SIEMENS / Detector: AREA DETECTOR / Date: 1995 |
Radiation | Monochromator: GRAPHITE(002) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 3→24.1 Å / Num. obs: 2177 / % possible obs: 96.4 % / Observed criterion σ(I): 2 / Redundancy: 3.9 % / Rmerge(I) obs: 0.075 |
-Processing
Software |
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Refinement | Method to determine structure: molecular replacement Starting model: PDB ENTRY 1WHO Resolution: 3→8 Å / σ(F): 2
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Displacement parameters | Biso mean: 14.2 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3→8 Å
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Refine LS restraints |
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Xplor file |
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