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Open data
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Basic information
Entry | Database: PDB / ID: 1vyd | ||||||
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Title | Crystal structure of cytochrome C2 mutant G95E | ||||||
![]() | CYTOCHROME C2 | ||||||
![]() | ELECTRON TRANSPORT / REDOX | ||||||
Function / homology | ![]() photosynthesis / electron transfer activity / heme binding / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Dumortier, C. / Fitch, J. / Van Petegem, F. / Vermeulen, W. / Meyer, T.E. / Van Beeumen, J.J. / Cusanovich, M.A. | ||||||
![]() | ![]() Title: Protein Dynamics in the Region of the Sixth Ligand Methionine Revealed by Studies of Imidazole Binding to Rhodobacter Capsulatus Cytochrome C2 Hinge Mutants. Authors: Dumortier, C. / Fitch, J. / Van Petegem, F. / Vermeulen, W. / Meyer, T.E. / Van Beeumen, J.J. / Cusanovich, M.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 59.3 KB | Display | ![]() |
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PDB format | ![]() | 44.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.2 MB | Display | ![]() |
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Full document | ![]() | 1.2 MB | Display | |
Data in XML | ![]() | 13.9 KB | Display | |
Data in CIF | ![]() | 17.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.26323, -0.45915, -0.84846), Vector: |
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Components
#1: Protein | Mass: 12358.074 Da / Num. of mol.: 2 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | Compound details | ENGINEERED | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.17 Å3/Da / Density % sol: 61.21 % |
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Crystal grow | pH: 7.5 / Details: pH 7.50 |
-Data collection
Diffraction | Mean temperature: 294 K |
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Diffraction source | Source: ![]() |
Detector | Type: MAC Science DIP-2030 / Detector: IMAGE PLATE / Details: MIRRORS |
Radiation | Monochromator: NI FILTER / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.3→10 Å / Num. obs: 12459 / % possible obs: 88 % / Rmerge(I) obs: 0.087 / Net I/σ(I): 13.27 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: WILD TYPE CYTOCHROME C2 Resolution: 2.3→10 Å / Cross valid method: THROUGHOUT
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Refinement step | Cycle: LAST / Resolution: 2.3→10 Å
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