[English] 日本語
Yorodumi- PDB-1sjl: A DUPLEX DNA WITH AN ABASIC SITE IN A DA TRACT, BETA FORM, NMR, M... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1sjl | ||||||
---|---|---|---|---|---|---|---|
Title | A DUPLEX DNA WITH AN ABASIC SITE IN A DA TRACT, BETA FORM, NMR, MINIMIZED AVERAGE STRUCTURE | ||||||
Components |
| ||||||
Keywords | DNA / DUPLEX DNA WITH AN ABASIC SITE IN A DA TRACT / DAMAGED DNA / AT TRACT DNA / DEOXYRIBONUCLEIC ACID | ||||||
Function / homology | DNA / DNA (> 10) Function and homology information | ||||||
Method | SOLUTION NMR | ||||||
Authors | Wang, K.Y. / Parker, S.A. / Goljer, I. / Bolton, P.H. | ||||||
Citation | Journal: Biochemistry / Year: 1997 Title: Solution structure of a duplex DNA with an abasic site in a dA tract. Authors: Wang, K.Y. / Parker, S.A. / Goljer, I. / Bolton, P.H. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1sjl.cif.gz | 22.4 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1sjl.ent.gz | 16.3 KB | Display | PDB format |
PDBx/mmJSON format | 1sjl.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/sj/1sjl ftp://data.pdbj.org/pub/pdb/validation_reports/sj/1sjl | HTTPS FTP |
---|
-Related structure data
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-Components
#1: DNA chain | Mass: 3680.432 Da / Num. of mol.: 1 / Source method: obtained synthetically |
---|---|
#2: DNA chain | Mass: 3536.278 Da / Num. of mol.: 1 / Source method: obtained synthetically |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
---|---|
NMR details | Text: THIS IS THE AVERAGE OF SIX STRUCTURES CALCULATED AT 2PS INTERVALS FROM 70 PICOSECONDS TO 80 PICOSECONDS DURING RESTRAINED MOLECULAR DYNAMICS. |
-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
---|
-Processing
Software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR software | Name: X-PLOR / Version: 3.1 / Developer: BRUNGER / Classification: refinement | ||||||||||||
NMR ensemble | Conformers calculated total number: 6 / Conformers submitted total number: 1 |