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Open data
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Basic information
Entry | Database: PDB / ID: 1rss | ||||||
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Title | RIBOSOMAL PROTEIN S7 FROM THERMUS THERMOPHILUS | ||||||
![]() | RIBOSOMAL PROTEIN S7 | ||||||
![]() | RIBOSOMAL PROTEIN / RNA-BINDING / TRANSLATION | ||||||
Function / homology | ![]() ribosomal small subunit assembly / cytosolic small ribosomal subunit / tRNA binding / rRNA binding / structural constituent of ribosome / translation / mRNA binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wimberly, B. / White, S. / Ramakrishnan, V. | ||||||
![]() | ![]() Title: The structure of ribosomal protein S7 at 1.9 A resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids. Authors: Wimberly, B.T. / White, S.W. / Ramakrishnan, V. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 42.9 KB | Display | ![]() |
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PDB format | ![]() | 29.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 17351.115 Da / Num. of mol.: 1 / Mutation: 5 RESIDUES DELETED FROM N-TERMINUS Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.7 Å3/Da / Density % sol: 40 % / Description: 2 WAVELENGTH MAD EXPERIMENT | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 277 K / pH: 8 Details: CRYSTALLIZED FROM 15% PEG 8000, 20% GLYCEROL, 6% MPD, 0.1 M NAHCO3, 0.1 M TRIS PH 8.0 AT 4 C, temperature 277K | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 4-13 ℃ / pH: 7.5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K | |||||||||
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Diffraction source | Source: ![]() ![]() ![]() | |||||||||
Detector | Type: BRANDEIS / Detector: CCD / Date: May 15, 1997 | |||||||||
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||
Radiation wavelength |
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Reflection | Resolution: 1.9→100 Å / Num. obs: 13428 / % possible obs: 99.8 % / Observed criterion σ(I): 0 / Redundancy: 7.7 % / Biso Wilson estimate: 25.9 Å2 / Rmerge(I) obs: 0.033 / Rsym value: 0.04 / Net I/σ(I): 37 | |||||||||
Reflection shell | Resolution: 1.9→1.98 Å / Redundancy: 5 % / Rmerge(I) obs: 0.064 / Mean I/σ(I) obs: 5 / Rsym value: 0.307 / % possible all: 95 | |||||||||
Reflection | *PLUS Num. measured all: 103923 |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 35.9 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.9→6 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.9→2.01 Å / Rfactor Rfree error: 0.022 / Total num. of bins used: 6
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Xplor file |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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