+Open data
-Basic information
Entry | Database: PDB / ID: 1rcp | ||||||
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Title | CYTOCHROME C' | ||||||
Components | CYTOCHROME C' | ||||||
Keywords | ELECTRON TRANSPORT / CYTOCHROME / HEME | ||||||
Function / homology | Function and homology information electron transport chain / periplasmic space / electron transfer activity / iron ion binding / heme binding Similarity search - Function | ||||||
Biological species | Rhodobacter capsulatus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2 Å | ||||||
Authors | Tahirov, T.H. / Misaki, S. / Meyer, T.E. / Cusanovich, M.A. / Higuchi, Y. / Yasuoka, N. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1996 Title: High-resolution crystal structures of two polymorphs of cytochrome c' from the purple phototrophic bacterium rhodobacter capsulatus. Authors: Tahirov, T.H. / Misaki, S. / Meyer, T.E. / Cusanovich, M.A. / Higuchi, Y. / Yasuoka, N. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1rcp.cif.gz | 75.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1rcp.ent.gz | 58 KB | Display | PDB format |
PDBx/mmJSON format | 1rcp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1rcp_validation.pdf.gz | 1.1 MB | Display | wwPDB validaton report |
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Full document | 1rcp_full_validation.pdf.gz | 1.1 MB | Display | |
Data in XML | 1rcp_validation.xml.gz | 14.2 KB | Display | |
Data in CIF | 1rcp_validation.cif.gz | 19 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rc/1rcp ftp://data.pdbj.org/pub/pdb/validation_reports/rc/1rcp | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.99999, -0.00113, -0.00433), Vector: |
-Components
#1: Protein | Mass: 13154.733 Da / Num. of mol.: 2 / Source method: isolated from a natural source Details: STRAIN M110 WAS DERIVED FROM THE WILD TYPE GENETIC STRAIN ST. LOUIS. THE CYTOCHROME C' DIFFERS FROM STRAIN SP7 IN 12 RESIDUES Source: (natural) Rhodobacter capsulatus (bacteria) / Strain: MT110 / References: UniProt: P00147 #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.78 Å3/Da / Density % sol: 53 % | |||||||||||||||
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Crystal grow | pH: 6.5 / Details: pH 6.5 | |||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, sitting drop | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 283 K |
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Diffraction source | Source: SYNCHROTRON / Site: Photon Factory / Beamline: BL-6A / Wavelength: 1 |
Detector | Type: FUJI / Detector: IMAGE PLATE / Date: Dec 22, 1994 |
Radiation | Monochromator: Y / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2→30 Å / Num. obs: 15826 / % possible obs: 79.3 % / Observed criterion σ(I): -3 / Redundancy: 3.89 % / Rmerge(I) obs: 0.057 / Net I/σ(I): 20.09 |
Reflection | *PLUS Num. measured all: 61516 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 2→6 Å / σ(F): 2 /
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Displacement parameters | Biso mean: 25.01 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.18 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→6 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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