- PDB-1q0v: Solution Structure of Tandem UIMs of Vps27 -
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Basic information
Entry
Database: PDB / ID: 1q0v
Title
Solution Structure of Tandem UIMs of Vps27
Components
hydrophilic protein; has cysteine rich putative zinc finger essential for function; Vps27p
Keywords
TRANSPORT BINDING / Stable / non-interacting alpha-helices
Function / homology
Function and homology information
positive regulation of protein maturation / microlipophagy / ESCRT-0 complex / microautophagy / protein retention in Golgi apparatus / protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / ATP export / protein targeting to vacuole / multivesicular body sorting pathway / late endosome to vacuole transport ...positive regulation of protein maturation / microlipophagy / ESCRT-0 complex / microautophagy / protein retention in Golgi apparatus / protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / ATP export / protein targeting to vacuole / multivesicular body sorting pathway / late endosome to vacuole transport / ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / phosphatidylinositol-3-phosphate binding / cellular response to nitrogen starvation / vacuolar membrane / K48-linked polyubiquitin modification-dependent protein binding / K63-linked polyubiquitin modification-dependent protein binding / protein secretion / ubiquitin binding / endosome membrane / endosome / protein heterodimerization activity / protein domain specific binding / protein-containing complex / metal ion binding Similarity search - Function
the submitted conformer models are the 20 structures with the lowest restraint energies, restraint violations, and RMS deviations from ideal covalent geometry
Method: TORSION ANGLE DYNAMICS, SIMULATED ANNEALING / Software ordinal: 1 Details: THE STRUCTURES ARE BASED ON A TOTAL OF 858 DISTANCE RESTRAINTS, INCLUDING 808 NOE-DERIVED DISTANCE RESTRAINTS [412 UNAMBIGUOUS AND 396 AMBIGUOUS RESTRAINTS], 50 HYDROGEN BONDING DISTANCE ...Details: THE STRUCTURES ARE BASED ON A TOTAL OF 858 DISTANCE RESTRAINTS, INCLUDING 808 NOE-DERIVED DISTANCE RESTRAINTS [412 UNAMBIGUOUS AND 396 AMBIGUOUS RESTRAINTS], 50 HYDROGEN BONDING DISTANCE RESTRAINTS, AND 66 TORSION ANGLE RESTRAINTS.
NMR representative
Selection criteria: the structure with the lowest restraint energy.
NMR ensemble
Conformer selection criteria: the submitted conformer models are the 20 structures with the lowest restraint energies, restraint violations, and RMS deviations from ideal covalent geometry Conformers calculated total number: 80 / Conformers submitted total number: 20
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