+Open data
-Basic information
Entry | Database: PDB / ID: 1mi0 | ||||||
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Title | Crystal Structure of the redesigned protein G variant NuG2 | ||||||
Components | immunoglobulin-binding protein G | ||||||
Keywords | IMMUNE SYSTEM / alpha-beta protein / redesigned beta-hairpin | ||||||
Function / homology | Function and homology information Protein L, Ig light chain-binding / Protein L b1 domain / IgG-binding B / B domain / Ubiquitin-like (UB roll) - #10 / Ubiquitin-like (UB roll) / Roll / Alpha Beta Similarity search - Domain/homology | ||||||
Biological species | Finegoldia magna (bacteria) | ||||||
Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 1.85 Å | ||||||
Authors | Nauli, S. / Kuhlman, B. / Le Trong, I. / Stenkamp, R.E. / Teller, D.C. / Baker, D. | ||||||
Citation | Journal: Biochemistry / Year: 2002 Title: Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2 Authors: Nauli, S. / Kuhlman, B. / Le Trong, I. / Stenkamp, R.E. / Teller, D.C. / Baker, D. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: AUTHOR PROVIDED | ||||||
Remark 999 | SEQUENCE THE SEQUENCE DIFFERS FROM PIR ENTRY A45063 AT RESIDUES 11-21, chain A, and residues 12-22, ...SEQUENCE THE SEQUENCE DIFFERS FROM PIR ENTRY A45063 AT RESIDUES 11-21, chain A, and residues 12-22, chain B, (PIR RESIDUES 328-384) BECAUSE THE AUTHORS REDESIGNED THE FIRST HAIRPIN. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1mi0.cif.gz | 38.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1mi0.ent.gz | 27.3 KB | Display | PDB format |
PDBx/mmJSON format | 1mi0.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mi/1mi0 ftp://data.pdbj.org/pub/pdb/validation_reports/mi/1mi0 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 7356.045 Da / Num. of mol.: 2 / Fragment: Redesigned B1 domain / Mutation: D52A Source method: isolated from a genetically manipulated source Details: REDESIGNED FIRST BETA-HAIRPIN, VARIANT NUG2 / Source: (gene. exp.) Finegoldia magna (bacteria) / Strain: ATCC 29328 / Production host: Escherichia coli (E. coli) / References: PIR: A45063, UniProt: Q53291*PLUS #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.31 Å3/Da / Density % sol: 46.81 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 8 Details: ammonium sulfate, tris-hcl, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K | ||||||||||||||||||||||||
Crystal grow | *PLUS pH: 7.5 | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU RU200 |
Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.85→19.84 Å / Num. all: 11456 / Num. obs: 11456 |
Reflection shell | Resolution: 1.85→1.93 Å / % possible all: 83 |
Reflection | *PLUS Num. obs: 10905 / % possible obs: 97.3 % / Rmerge(I) obs: 0.067 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.85→19.84 Å
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Refinement step | Cycle: LAST / Resolution: 1.85→19.84 Å
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Refine LS restraints |
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Refinement | *PLUS Lowest resolution: 15 Å / Num. reflection obs: 9780 / Rfactor Rwork: 0.26 | |||||||||||||||
Solvent computation | *PLUS | |||||||||||||||
Displacement parameters | *PLUS |