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Yorodumi- PDB-1l5i: 30-CONFORMER NMR ENSEMBLE OF THE N-TERMINAL, DNA-BINDING DOMAIN O... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1l5i | ||||||
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Title | 30-CONFORMER NMR ENSEMBLE OF THE N-TERMINAL, DNA-BINDING DOMAIN OF THE REPLICATION INITIATION PROTEIN FROM A GEMINIVIRUS (TOMATO YELLOW LEAF CURL VIRUS-SARDINIA) | ||||||
Components | Rep protein | ||||||
Keywords | VIRAL PROTEIN / A+B FOLD / RBD-LIKE FOLD | ||||||
Function / homology | Function and homology information endodeoxyribonuclease activity, producing 5'-phosphomonoesters / Hydrolases; Acting on ester bonds; Endodeoxyribonucleases producing 5'-phosphomonoesters / nucleotidyltransferase activity / helicase activity / Transferases; Transferring phosphorus-containing groups; Nucleotidyltransferases / DNA replication / host cell nucleus / structural molecule activity / DNA binding / ATP binding / metal ion binding Similarity search - Function | ||||||
Biological species | Tomato yellow leaf curl Sardinia virus | ||||||
Method | SOLUTION NMR / TORSION ANGLE SIMULATED ANHEALING | ||||||
Authors | Campos-Olivas, R. / Louis, J.M. / Clerot, D. / Gronenborn, B. / Gronenborn, A.M. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2002 Title: The structure of a replication initiator unites diverse aspects of nucleic acid metabolism Authors: Campos-Olivas, R. / Louis, J.M. / Clerot, D. / Gronenborn, B. / Gronenborn, A.M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1l5i.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb1l5i.ent.gz | 918 KB | Display | PDB format |
PDBx/mmJSON format | 1l5i.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/l5/1l5i ftp://data.pdbj.org/pub/pdb/validation_reports/l5/1l5i | HTTPS FTP |
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-Related structure data
Related structure data | 1l2mC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 13583.302 Da / Num. of mol.: 1 Fragment: N-terminal domain (residues 4-121), DNA-binding domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) Tomato yellow leaf curl Sardinia virus / Genus: Begomovirus / Gene: Rep / Production host: Escherichia coli (E. coli) / References: UniProt: P27260 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: THIS ENTRY CONTAINS THE 30-CONFORMER ENSEMBLE. THE MINIMIZED AVERAGE STRUCTURE OF THIS ENSEMBLE HAS BEEN DEPOSITED UNDER CODE 1L2M, AND IT IS A GOOD REPRESENTATION OF THE 30-CONFORMER ENSEMBLE CONTAINED HERE. |
-Sample preparation
Details |
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Sample conditions | Ionic strength: 0.3M / pH: 6.6 / Pressure: AMBIENT / Temperature: 298 K | ||||||||||
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: TORSION ANGLE SIMULATED ANHEALING / Software ordinal: 1 | ||||||||||||||||||
NMR ensemble | Conformers submitted total number: 30 |