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データを開く
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基本情報
登録情報 | データベース: PDB / ID: 1igr | |||||||||
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タイトル | Type 1 Insulin-like growth factor receptor (DOMAINS 1-3) | |||||||||
![]() | INSULIN-LIKE GROWTH FACTOR RECEPTOR 1 | |||||||||
![]() | HORMONE RECEPTOR / INSULIN RECEPTOR FAMILY | |||||||||
機能・相同性 | ![]() cardiac atrium development / negative regulation of cholangiocyte apoptotic process / positive regulation of steroid hormone biosynthetic process / protein kinase complex / insulin-like growth factor binding / Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R) / protein transporter activity / IRS-related events triggered by IGF1R / negative regulation of muscle cell apoptotic process / cellular response to progesterone stimulus ...cardiac atrium development / negative regulation of cholangiocyte apoptotic process / positive regulation of steroid hormone biosynthetic process / protein kinase complex / insulin-like growth factor binding / Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R) / protein transporter activity / IRS-related events triggered by IGF1R / negative regulation of muscle cell apoptotic process / cellular response to progesterone stimulus / positive regulation of DNA metabolic process / cellular response to zinc ion starvation / cellular response to aldosterone / cellular response to testosterone stimulus / insulin receptor complex / transcytosis / insulin-like growth factor I binding / negative regulation of hepatocyte apoptotic process / positive regulation of protein-containing complex disassembly / alphav-beta3 integrin-IGF-1-IGF1R complex / response to alkaloid / regulation of JNK cascade / dendritic spine maintenance / insulin binding / cellular response to insulin-like growth factor stimulus / response to L-glutamate / establishment of cell polarity / positive regulation of axon regeneration / positive regulation of osteoblast proliferation / positive regulation of cytokinesis / amyloid-beta clearance / Respiratory syncytial virus (RSV) attachment and entry / insulin receptor substrate binding / cellular response to angiotensin / response to vitamin E / G-protein alpha-subunit binding / negative regulation of MAPK cascade / SHC-related events triggered by IGF1R / phosphatidylinositol 3-kinase binding / peptidyl-tyrosine autophosphorylation / estrous cycle / cellular response to transforming growth factor beta stimulus / T-tubule / cerebellum development / cellular response to dexamethasone stimulus / axonogenesis / insulin-like growth factor receptor signaling pathway / hippocampus development / phosphatidylinositol 3-kinase/protein kinase B signal transduction / response to nicotine / positive regulation of smooth muscle cell proliferation / insulin receptor binding / cellular response to estradiol stimulus / placental growth factor receptor activity / cellular response to glucose stimulus / insulin receptor activity / vascular endothelial growth factor receptor activity / hepatocyte growth factor receptor activity / macrophage colony-stimulating factor receptor activity / platelet-derived growth factor alpha-receptor activity / platelet-derived growth factor beta-receptor activity / stem cell factor receptor activity / boss receptor activity / protein tyrosine kinase collagen receptor activity / brain-derived neurotrophic factor receptor activity / transmembrane-ephrin receptor activity / GPI-linked ephrin receptor activity / epidermal growth factor receptor activity / fibroblast growth factor receptor activity / insulin-like growth factor receptor activity / receptor protein-tyrosine kinase / caveola / cellular response to mechanical stimulus / cellular response to amyloid-beta / cellular senescence / insulin receptor signaling pathway / positive regulation of cold-induced thermogenesis / protein autophosphorylation / protein tyrosine kinase activity / response to ethanol / Extra-nuclear estrogen signaling / positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / receptor complex / positive regulation of MAPK cascade / immune response / cilium / positive regulation of cell migration / axon / neuronal cell body / intracellular membrane-bounded organelle / positive regulation of cell population proliferation / protein-containing complex binding / negative regulation of apoptotic process / nucleolus / signal transduction / ATP binding / identical protein binding / membrane / plasma membrane 類似検索 - 分子機能 | |||||||||
生物種 | ![]() | |||||||||
手法 | ![]() ![]() | |||||||||
![]() | Garrett, T.P.J. / Mckern, N.M. / Lou, M. / Frenkel, M.J. / Bentley, J.D. / Lovrecz, G.O. / Elleman, T.C. / Cosgrove, L.J. / Ward, C.W. | |||||||||
![]() | ![]() タイトル: Crystal structure of the first three domains of the type-1 insulin-like growth factor receptor. 著者: Garrett, T.P. / McKern, N.M. / Lou, M. / Frenkel, M.J. / Bentley, J.D. / Lovrecz, G.O. / Elleman, T.C. / Cosgrove, L.J. / Ward, C.W. #1: ![]() タイトル: Crystallization of the First Three Domains of the Human Insulin-Like Growth Factor-1 Receptor 著者: Mckern, N.M. / Lou, M. / Frenkel, M.J. / Verkuylen, A. / Bentley, J.D. / Lovrecz, G.O. / Ivancic, N. / Elleman, T.C. / Garrett, T.P.J. / Cosgrove, L.J. / Ward, C.W. | |||||||||
履歴 |
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構造の表示
構造ビューア | 分子: ![]() ![]() |
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ダウンロードとリンク
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ダウンロード
PDBx/mmCIF形式 | ![]() | 114.6 KB | 表示 | ![]() |
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PDB形式 | ![]() | 86.8 KB | 表示 | ![]() |
PDBx/mmJSON形式 | ![]() | ツリー表示 | ![]() | |
その他 | ![]() |
-検証レポート
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
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-関連構造データ
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リンク
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集合体
登録構造単位 | ![]()
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単位格子 |
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要素
-タンパク質 , 1種, 1分子 A
#1: タンパク質 | 分子量: 54393.746 Da / 分子数: 1 / 断片: UNP residues 31-492 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() 解説: LARGE SCALE CELL CULTURE IN A CELLGEN PLUS BIOREACTOR 細胞内の位置: CYTOPLASMIC MEMBRANE / 器官: PLACENTA / プラスミド: PEE14/IGF-1R/462 / 細胞株 (発現宿主): LEC8 / 細胞内の位置 (発現宿主): SECRETED / Culture collection (発現宿主): CRL:1737 発現宿主: ![]() ![]() 参照: UniProt: P08069, receptor protein-tyrosine kinase |
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-糖 , 3種, 4分子 
#2: 多糖 | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta- ...2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose |
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#3: 多糖 | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1- ...alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose |
#4: 糖 |
-非ポリマー , 2種, 56分子 


#5: 化合物 | ChemComp-SO4 / #6: 水 | ChemComp-HOH / | |
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-詳細
Has protein modification | Y |
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-実験情報
-実験
実験 | 手法: ![]() |
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試料調製
結晶 | マシュー密度: 4.27 Å3/Da / 溶媒含有率: 66 % | ||||||||||||||||||||
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結晶化 | pH: 7.5 詳細: PROTEIN WAS CRYSTALLIZED FROM 2.0 M AMMONIUM SULFATE, 100 MM HEPES, PH 7.5 | ||||||||||||||||||||
結晶 | *PLUS | ||||||||||||||||||||
結晶化 | *PLUS pH: 8 / 手法: 蒸気拡散法, ハンギングドロップ法 / 詳細: Mckern, N.M., (1997) Protein Sci., 6, 2663. | ||||||||||||||||||||
溶液の組成 | *PLUS
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-データ収集
回折 | 平均測定温度: 103 K |
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放射光源 | 由来: ![]() |
検出器 | タイプ: RIGAKU RAXIS IV / 検出器: IMAGE PLATE / 日付: 1996年11月15日 / 詳細: MIRRORS |
放射 | モノクロメーター: NI FILTER / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 1.5418 Å / 相対比: 1 |
反射 | 解像度: 2.6→15 Å / Num. obs: 26963 / % possible obs: 99.6 % / Observed criterion σ(I): 0 / 冗長度: 4.1 % / Rmerge(I) obs: 0.064 / Net I/σ(I): 18.7 |
反射 シェル | 解像度: 2.6→2.69 Å / 冗長度: 3.8 % / Rmerge(I) obs: 0.519 / Mean I/σ(I) obs: 3.3 / % possible all: 97.4 |
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解析
ソフトウェア |
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精密化 | 構造決定の手法: ![]() 詳細: PLANAR RESTRAIN FOR PEPTIDES, RMS=0.0384, SIGMA=0.04, AROMATIC PLANES RMS= 0.0097, SIGMA=0.015 POSITIONS OF ATOMS WITH B GREATER THAN 75 ARE NOT RELIABLE. ATOMS HAVE BEEN GIVEN OCCUPANCY OF 0. ...詳細: PLANAR RESTRAIN FOR PEPTIDES, RMS=0.0384, SIGMA=0.04, AROMATIC PLANES RMS= 0.0097, SIGMA=0.015 POSITIONS OF ATOMS WITH B GREATER THAN 75 ARE NOT RELIABLE. ATOMS HAVE BEEN GIVEN OCCUPANCY OF 0.01 OR OMITTED IF NO ELECTRON DENSITY WAS OBSERVED. FOR RESIDUES 457-459 THE DENSITY WAS NOTABLY WEAKER THAN THE ADJACENT RESIDUES. THIS SECTION HAS BEEN INCLUDED WITH OCCUPANCY OF 0.5
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原子変位パラメータ | Biso mean: 52.3 Å2
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精密化ステップ | サイクル: LAST / 解像度: 2.6→7 Å
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拘束条件 |
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ソフトウェア | *PLUS 名称: REFMAC / 分類: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
精密化 | *PLUS 最高解像度: 2.6 Å / σ(F): 2 / % reflection Rfree: 10 % / Rfactor obs: 0.237 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
溶媒の処理 | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
原子変位パラメータ | *PLUS Biso mean: 52.3 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
拘束条件 | *PLUS タイプ: p_plane_restr / Dev ideal target: 0.04 |