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- PDB-1hox: CRYSTAL STRUCTURE OF RABBIT PHOSPHOGLUCOSE ISOMERASE COMPLEXED WI... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1hox | ||||||
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Title | CRYSTAL STRUCTURE OF RABBIT PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH FRUCTOSE-6-PHOSPHATE | ||||||
![]() | PHOSPHOGLUCOSE ISOMERASE | ||||||
![]() | ISOMERASE / EMZYME -SUBSTRATE COMPLEX | ||||||
Function / homology | ![]() glucose-6-phosphate isomerase / glucose-6-phosphate isomerase activity / glucose 6-phosphate metabolic process / carbohydrate derivative binding / monosaccharide binding / cytokine activity / gluconeogenesis / glycolytic process / extracellular space / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Jeffrey, C.J. / Lee, J.H. / Chang, K.Z. / Patel, V. | ||||||
![]() | ![]() Title: Crystal structure of rabbit phosphoglucose isomerase complexed with its substrate D-fructose 6-phosphate. Authors: Lee, J.H. / Chang, K.Z. / Patel, V. / Jeffery, C.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 246.3 KB | Display | ![]() |
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PDB format | ![]() | 195.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.2 MB | Display | ![]() |
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Full document | ![]() | 1.2 MB | Display | |
Data in XML | ![]() | 52.1 KB | Display | |
Data in CIF | ![]() | 76.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1dqrS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 62827.621 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Details: PROTEIN PURIFIED FROM RABBIT SKELETAL MUSCLE / Source: (natural) ![]() ![]() #2: Sugar | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.66 Å3/Da / Density % sol: 53.83 % | ||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 295 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: PEG 8000, IMIDAZOLE, POTASSIUM CHLORIDE, PHOSPHOGLUCOSE ISOMERASE, D-GLUCOSE-6-PHOSPHATE, MAGNESIUM ACETATE, SODIUM CACODYLATE, pH 7.5. VAPOR DIFFUSION, HANGING DROP at 295K | ||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 93 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Jun 12, 1999 |
Radiation | Monochromator: BENT CONICAL SI-MIRROR (RH COATING), BENT CYLINDRICAL GE(111) Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→30 Å / Num. all: 77413 / Num. obs: 77413 / % possible obs: 98.6 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 4.08 % / Biso Wilson estimate: 29.19 Å2 / Rmerge(I) obs: 0.049 / Rsym value: 0.049 / Net I/σ(I): 18.47 |
Reflection shell | Resolution: 2.1→2.18 Å / Redundancy: 4.08 % / Rmerge(I) obs: 0.346 / Mean I/σ(I) obs: 3.63 / Num. unique all: 7640 / Rsym value: 0.346 / % possible all: 98.3 |
Reflection | *PLUS Lowest resolution: 30 Å / Num. measured all: 315852 |
Reflection shell | *PLUS % possible obs: 98.3 % / Num. unique obs: 7640 / Num. measured obs: 31147 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1DQR Resolution: 2.1→30 Å / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / Stereochemistry target values: CNS
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.1→30 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.1→2.18 Å / Total num. of bins used: 6
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Software | *PLUS Name: CNS / Classification: refinement | |||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.1 Å / Lowest resolution: 30 Å / σ(F): 0 / % reflection Rfree: 9.5 % / Rfactor obs: 0.193 | |||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||
Refine LS restraints | *PLUS
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