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- PDB-1hl7: Gamma lactamase from an Aureobacterium species in complex with 3a... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1hl7 | ||||||
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Title | Gamma lactamase from an Aureobacterium species in complex with 3a,4,7,7a-tetrahydro-benzo [1,3] dioxol-2-one | ||||||
![]() | GAMMA LACTAMASE | ||||||
![]() | HYDROLASE / ALPHA/BETA HYDROLASE / CO-FACTOR FREE HALOPEROXIDASE / TETRAHEDRAL INTERMEDIATE | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Line, K. / Isupov, M.N. / Littlechild, J.A. | ||||||
![]() | ![]() Title: The Crystal Structure of a (-)Gamma-Lactamase from an Aureobacterium Species Reveals a Tetrahedral Intermediate in the Active Site Authors: Line, K. / Isupov, M.N. / Littlechild, J.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 134.7 KB | Display | ![]() |
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PDB format | ![]() | 106.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 437 KB | Display | ![]() |
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Full document | ![]() | 438.7 KB | Display | |
Data in XML | ![]() | 28.2 KB | Display | |
Data in CIF | ![]() | 44.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1hkhC ![]() 1broS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.32744, 0.77849, -0.53548), Vector: |
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Components
#1: Protein | Mass: 30878.264 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | Sequence details | NAMED CO-FACTOR FREE HALOPEROXI | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.72 Å3/Da / Density % sol: 73.73 % |
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Crystal grow | pH: 8 / Details: pH 8.00 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Jun 15, 2001 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.8482 Å / Relative weight: 1 |
Reflection | Resolution: 1.73→11 Å / Num. obs: 118797 / % possible obs: 100 % / Redundancy: 7.5 % / Biso Wilson estimate: 15.9 Å2 / Rmerge(I) obs: 0.079 / Net I/σ(I): 28.18 |
Reflection shell | Resolution: 1.73→1.76 Å / Redundancy: 7.2 % / Rmerge(I) obs: 0.345 / Mean I/σ(I) obs: 4.5 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1BRO Resolution: 1.73→11 Å / SU B: 0.981 / SU ML: 0.033 / Cross valid method: THROUGHOUT / ESU R: 0.061 / ESU R Free: 0.06
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Displacement parameters | Biso mean: 15.6 Å2 | ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.73→11 Å
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