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Yorodumi- PDB-1gbs: CRYSTAL STRUCTURE OF BLACK SWAN GOOSE-TYPE LYSOZYME AT 1.8 ANGSTR... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1gbs | ||||||
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Title | CRYSTAL STRUCTURE OF BLACK SWAN GOOSE-TYPE LYSOZYME AT 1.8 ANGSTROMS RESOLUTION | ||||||
Components | AUSTRALIAN BLACK SWAN EGG WHITE LYSOZYME | ||||||
Keywords | HYDROLASE (O-GLYCOSYL) | ||||||
Function / homology | Function and homology information peptidoglycan catabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to bacterium / extracellular region Similarity search - Function | ||||||
Biological species | Cygnus atratus (black swan) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.5 Å | ||||||
Authors | Rao, Z. / Machin, K. / Isaacs, N. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1995 Title: A strategy for rapid and effective refinement applied to black swan lysozyme. Authors: Rao, Z. / Esnouf, R. / Isaacs, N. / Stuart, D. #1: Journal: Acta Crystallogr.,Sect.D / Year: 1995 Title: A Strategy for Rapid and Effective Refinement Applied to Black Swan Lysozyme Authors: Rao, Z. / Esnouf, R. / Isaacs, N. / Stuart, D. #2: Journal: Thesis, University of Melbourne / Year: 1989 Title: Structure Determination and Refinement of the Goose-Type Lysozyme from the Black Swan Authors: Rao, Z. #3: Journal: Aust.J.Biol.Sci. / Year: 1985 Title: Structure of a G-Type Goose_Type Lysozyme at 2.5 Angstroms Resolution Authors: Isaacs, N. / Machin, K. / Masakuno, M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1gbs.cif.gz | 48.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1gbs.ent.gz | 35.1 KB | Display | PDB format |
PDBx/mmJSON format | 1gbs.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1gbs_validation.pdf.gz | 359.3 KB | Display | wwPDB validaton report |
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Full document | 1gbs_full_validation.pdf.gz | 359.6 KB | Display | |
Data in XML | 1gbs_validation.xml.gz | 4.8 KB | Display | |
Data in CIF | 1gbs_validation.cif.gz | 7.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gb/1gbs ftp://data.pdbj.org/pub/pdb/validation_reports/gb/1gbs | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 20434.172 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Cygnus atratus (black swan) / References: UniProt: P00717, lysozyme |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.85 Å3/Da / Density % sol: 56.83 % |
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.8→20 Å / Num. obs: 19189 / % possible obs: 95 % / Observed criterion σ(I): 0 |
-Processing
Software |
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Refinement | Resolution: 1.5→20 Å / σ(I): 0 /
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Refinement step | Cycle: LAST / Resolution: 1.5→20 Å
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