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Yorodumi- PDB-153l: THE REFINED STRUCTURES OF GOOSE LYSOZYME AND ITS COMPLEX WITH A B... -
+Open data
-Basic information
Entry | Database: PDB / ID: 153l | ||||||
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Title | THE REFINED STRUCTURES OF GOOSE LYSOZYME AND ITS COMPLEX WITH A BOUND TRISACCHARIDE SHOW THAT THE "GOOSE-TYPE LYSOZYMES LACK A CATALYTIC ASPARTATE | ||||||
Components | GOOSE LYSOZYME | ||||||
Keywords | HYDROLASE(O-GLYCOSYL) | ||||||
Function / homology | Function and homology information peptidoglycan catabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to bacterium / extracellular region Similarity search - Function | ||||||
Biological species | Anser anser anser (western graylag goose) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.6 Å | ||||||
Authors | Weaver, L.H. / Gruetter, M.G. / Matthews, B.W. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1995 Title: The refined structures of goose lysozyme and its complex with a bound trisaccharide show that the "goose-type" lysozymes lack a catalytic aspartate residue. Authors: Weaver, L.H. / Grutter, M.G. / Matthews, B.W. #1: Journal: J.Mol.Biol. / Year: 1987 Title: The Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution Authors: Weaver, L.H. / Matthews, B.W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 153l.cif.gz | 47 KB | Display | PDBx/mmCIF format |
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PDB format | pdb153l.ent.gz | 36.4 KB | Display | PDB format |
PDBx/mmJSON format | 153l.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/53/153l ftp://data.pdbj.org/pub/pdb/validation_reports/53/153l | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 20406.139 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Anser anser anser (western graylag goose) References: UniProt: P00718, lysozyme |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.5 Å3/Da / Density % sol: 50.88 % | |||||||||||||||
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Crystal grow | *PLUS pH: 6.6 / Method: batch method | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.6 Å / Num. obs: 20143 / % possible obs: 73 % / Num. measured all: 71001 / Rmerge F obs: 0.074 |
-Processing
Software | Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.6→6 Å / σ(F): 0 /
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Refinement step | Cycle: LAST / Resolution: 1.6→6 Å
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Refine LS restraints |
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