+Open data
-Basic information
Entry | Database: PDB / ID: 1fvp | ||||||
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Title | FLAVOPROTEIN 390 | ||||||
Components | FLAVOPROTEIN 390 | ||||||
Keywords | FLAVIN-BINDING PROTEIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Photobacterium phosphoreum (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2.7 Å | ||||||
Authors | Kita, A. / Miki, K. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1996 Title: Structure of flavoprotein FP390 from a luminescent bacterium Photobacterium phosphoreum refined at 2.7 A resolution. Authors: Kita, A. / Kasai, S. / Miyata, M. / Miki, K. #1: Journal: J.Biochem.(Tokyo) / Year: 1995 Title: Crystal Structure Determination of a Flavoprotein Fp390 from a Luminescent Bacterium, Photobacterium Phosphoreum Authors: Kita, A. / Kasai, S. / Miki, K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fvp.cif.gz | 109.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1fvp.ent.gz | 86 KB | Display | PDB format |
PDBx/mmJSON format | 1fvp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fv/1fvp ftp://data.pdbj.org/pub/pdb/validation_reports/fv/1fvp | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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Unit cell |
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-Components
#1: Protein | Mass: 26644.131 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Photobacterium phosphoreum (bacteria) / Strain: IFO 13896 / References: UniProt: P12745 #2: Chemical | ChemComp-FMA / #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.35 Å3/Da / Density % sol: 63.26 % | ||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / pH: 9 / Method: vapor diffusion, sitting drop / Details: Kita, A., (1991) J.Biochem., 110, 748. | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Source: SYNCHROTRON / Site: Photon Factory / Beamline: BL-6B / Wavelength: 1 |
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Detector | Type: WEISSENBERG |
Radiation | Monochromator: SI(111) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.7→6 Å / Num. obs: 17448 / % possible obs: 93.1 % / Rmerge(I) obs: 0.062 |
Reflection | *PLUS Rmerge(I) obs: 0.062 |
-Processing
Software |
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Refinement | Resolution: 2.7→6 Å / σ(F): 2 /
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Displacement parameters | Biso mean: 35.41 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.4 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.7→6 Å
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Refine LS restraints |
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Refinement | *PLUS Rfactor obs: 0.24 / Rfactor Rwork: 0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 35.417 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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