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- PDB-1fig: ROUTES TO CATALYSIS: STRUCTURE OF A CATALYTIC ANTIBODY AND COMPAR... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1fig | ||||||
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Title | ROUTES TO CATALYSIS: STRUCTURE OF A CATALYTIC ANTIBODY AND COMPARISON WITH ITS NATURAL COUNTERPART | ||||||
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![]() | IMMUNOGLOBULIN | ||||||
Function / homology | Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta / Chem-TSA / : / : ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Haynes, M.R. / Stura, E.A. / Hilvert, D. / Wilson, I.A. | ||||||
![]() | ![]() Title: Routes to catalysis: structure of a catalytic antibody and comparison with its natural counterpart. Authors: Haynes, M.R. / Stura, E.A. / Hilvert, D. / Wilson, I.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 85.6 KB | Display | ![]() |
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PDB format | ![]() | 61.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 402.2 KB | Display | ![]() |
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Full document | ![]() | 433.2 KB | Display | |
Data in XML | ![]() | 13.7 KB | Display | |
Data in CIF | ![]() | 19.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO L 8 2: VAL L 58 - PRO L 59 OMEGA =149.81 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 3: CIS PROLINE - PRO L 95 4: PRO L 119 - PRO L 120 OMEGA =216.92 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 5: CIS PROLINE - PRO L 141 / 6: CIS PROLINE - PRO H 9 7: SER H 75 - SER H 76 OMEGA =145.05 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 8: CIS PROLINE - PRO H 149 / 9: CIS PROLINE - PRO H 151 / 10: CIS PROLINE - PRO H 200 11: TSA IS THE TRANSITION STATE ANALOG HAPTEN USED TO ELICIT 1F7. |
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Components
#1: Antibody | Mass: 23302.639 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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#2: Antibody | Mass: 23174.959 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
#3: Chemical | ChemComp-TSA / |
#4: Water | ChemComp-HOH / |
Nonpolymer details | TSA IS THE TRANSITION |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.25 Å3/Da / Density % sol: 45.42 % | |||||||||||||||
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Crystal grow | *PLUS Temperature: 22.5 ℃ / pH: 7.25 / Method: vapor diffusion, sitting drop | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 3 Å / Num. obs: 8660 / % possible obs: 95.8 % / Num. measured all: 19033 / Rmerge(I) obs: 0.086 |
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Processing
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Refinement | Resolution: 3→12 Å / σ(F): 0 /
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Refinement step | Cycle: LAST / Resolution: 3→12 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Num. reflection all: 19033 / Rfactor all: 0.22 / Rfactor Rwork: 0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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