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Yorodumi- PDB-1fbi: CRYSTAL STRUCTURE OF A CROSS-REACTION COMPLEX BETWEEN FAB F9.13.7... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1fbi | ||||||
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Title | CRYSTAL STRUCTURE OF A CROSS-REACTION COMPLEX BETWEEN FAB F9.13.7 AND GUINEA-FOWL LYSOZYME | ||||||
Components |
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Keywords | COMPLEX (ANTIBODY/ANTIGEN) / COMPLEX (ANTIBODY-ANTIGEN) / COMPLEX (ANTIBODY-ANTIGEN) complex | ||||||
Function / homology | Function and homology information humoral immune response mediated by circulating immunoglobulin / phagocytosis, recognition / positive regulation of type IIa hypersensitivity / positive regulation of type I hypersensitivity / antibody-dependent cellular cytotoxicity / Fc-gamma receptor I complex binding / phagocytosis, engulfment / immunoglobulin complex, circulating / IgG immunoglobulin complex / immunoglobulin receptor binding ...humoral immune response mediated by circulating immunoglobulin / phagocytosis, recognition / positive regulation of type IIa hypersensitivity / positive regulation of type I hypersensitivity / antibody-dependent cellular cytotoxicity / Fc-gamma receptor I complex binding / phagocytosis, engulfment / immunoglobulin complex, circulating / IgG immunoglobulin complex / immunoglobulin receptor binding / immunoglobulin mediated immune response / metabolic process / positive regulation of phagocytosis / complement activation, classical pathway / antigen binding / B cell differentiation / positive regulation of immune response / lysozyme / lysozyme activity / antibacterial humoral response / killing of cells of another organism / defense response to bacterium / external side of plasma membrane / extracellular space / extracellular region / plasma membrane / cytoplasm Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) Numida meleagris (helmeted guineafowl) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 3 Å | ||||||
Authors | Lescar, J. / Alzari, P.M. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1995 Title: Crystal structure of a cross-reaction complex between Fab F9.13.7 and guinea fowl lysozyme. Authors: Lescar, J. / Pellegrini, M. / Souchon, H. / Tello, D. / Poljak, R.J. / Peterson, N. / Greene, M. / Alzari, P.M. #1: Journal: Protein Sci. / Year: 1994 Title: Crystal Structures of Pheasant and Guinea-Fowl Egg-White Lysozymes Authors: Lescar, J. / Souchon, H. / Alzari, P. #2: Journal: Proteins / Year: 1993 Title: Crystallization, Preliminary X-Ray Diffraction Study, and Crystal Packing of a Complex between Anti-Hen Lysozyme Antibody and Guinea-Fowl Lysozyme Authors: Lescar, J. / Riottot, M.-M. / Souchon, H. / Chitarra, V. / Bentley, G. / Navaza, J. / Alzari, P. / Poljak, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fbi.cif.gz | 213.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1fbi.ent.gz | 179.2 KB | Display | PDB format |
PDBx/mmJSON format | 1fbi.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fb/1fbi ftp://data.pdbj.org/pub/pdb/validation_reports/fb/1fbi | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO L 95 / 2: CIS PROLINE - PRO L 141 / 3: CIS PROLINE - PRO H 156 / 4: CIS PROLINE - PRO H 158 / 5: CIS PROLINE - PRO H 198 / 6: CIS PROLINE - PRO P 95 / 7: CIS PROLINE - PRO P 141 / 8: CIS PROLINE - PRO Q 41 / 9: CIS PROLINE - PRO Q 156 / 10: CIS PROLINE - PRO Q 158 / 11: CIS PROLINE - PRO Q 198 |
-Components
#1: Antibody | Mass: 23833.268 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: UniProt: P01837*PLUS #2: Antibody | Mass: 23634.373 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: UniProt: P01868 #3: Protein | Mass: 14329.186 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Numida meleagris (helmeted guineafowl) / References: UniProt: P00704, lysozyme |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.15 Å3/Da / Density % sol: 60.95 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 17 ℃ / pH: 5.5 / Method: vapor diffusion, hanging dropDetails: Lescar, J., (1993) Proteins.Struct.,Funct., Genet., 15, 209. | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | Num. obs: 28224 / % possible obs: 95 % |
Reflection | *PLUS Highest resolution: 3 Å / Num. obs: 30232 / Num. measured all: 111931 / Rmerge(I) obs: 0.14 / Rmerge F obs: 1 |
-Processing
Software |
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Refinement | Resolution: 3→7 Å / σ(F): 3 /
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Refinement step | Cycle: LAST / Resolution: 3→7 Å
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Refine LS restraints |
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Refinement | *PLUS σ(F): 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 1.65 |