+Open data
-Basic information
Entry | Database: PDB / ID: 1efu | ||||||
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Title | ELONGATION FACTOR COMPLEX EF-TU/EF-TS FROM ESCHERICHIA COLI | ||||||
Components |
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Keywords | COMPLEX (TWO ELONGATION FACTORS) / ELONGATION FACTOR | ||||||
Function / homology | Function and homology information guanyl-nucleotide exchange factor complex / guanosine tetraphosphate binding / translational elongation / translation elongation factor activity / guanyl-nucleotide exchange factor activity / response to antibiotic / GTPase activity / GTP binding / RNA binding / zinc ion binding ...guanyl-nucleotide exchange factor complex / guanosine tetraphosphate binding / translational elongation / translation elongation factor activity / guanyl-nucleotide exchange factor activity / response to antibiotic / GTPase activity / GTP binding / RNA binding / zinc ion binding / membrane / plasma membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MIR / Resolution: 2.5 Å | ||||||
Authors | Kawashima, T. / Berthet-Colominas, C. / Wulff, M. / Cusack, S. / Leberman, R. | ||||||
Citation | Journal: Nature / Year: 1996 Title: The structure of the Escherichia coli EF-Tu.EF-Ts complex at 2.5 A resolution. Authors: Kawashima, T. / Berthet-Colominas, C. / Wulff, M. / Cusack, S. / Leberman, R. #1: Journal: Acta Crystallogr.,Sect.D / Year: 1996 Title: Interconversion of Crystals of the Escherichia Coli EF-TU.EF-Ts Complex between High-and Low-Diffraction Forms Authors: Kawashima, T. / Berthet-Colominas, C. / Cusack, S. / Leberman, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1efu.cif.gz | 281.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1efu.ent.gz | 223.8 KB | Display | PDB format |
PDBx/mmJSON format | 1efu.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ef/1efu ftp://data.pdbj.org/pub/pdb/validation_reports/ef/1efu | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 42230.168 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Strain: N4830-1 / Plasmid: CPC40 / Gene (production host): TSF / Production host: Escherichia coli (E. coli) / References: UniProt: P0A6N1, UniProt: P0CE48*PLUS #2: Protein | Mass: 30332.795 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Strain: N4830-1 Description: THE CPC40 WITH THE TSF GENE INSERTED WAS USED TO TRANSFORM N4830-1. THIS LEAD TO THE COPURIFICATION OF EF-TU AND EF-TS. Plasmid: CPC40 / Gene (production host): TSF / Production host: Escherichia coli (E. coli) / References: UniProt: P0A6P1 #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.67 Å3/Da / Density % sol: 43 % | ||||||||||||||||||||||||||||||
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Crystal grow | pH: 7.7 / Details: pH 7.7 | ||||||||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 19-20 ℃ / Method: vapor diffusion, sitting drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID09 / Wavelength: 0.883 |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Mar 13, 1995 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.883 Å / Relative weight: 1 |
Reflection | Resolution: 2.48→44.28 Å / Num. obs: 51804 / % possible obs: 98.2 % / Observed criterion σ(I): 4 / Redundancy: 3.8 % / Biso Wilson estimate: 47.66 Å2 / Rsym value: 0.043 / Net I/σ(I): 13.8 |
Reflection shell | Resolution: 2.48→2.55 Å / Redundancy: 3.2 % / Mean I/σ(I) obs: 4.9 / Rsym value: 0.151 / % possible all: 80.3 |
-Processing
Software |
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Refinement | Method to determine structure: MIR / Resolution: 2.5→8 Å / σ(F): 0
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Displacement parameters | Biso mean: 37.3 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati sigma a obs: 0.01 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.5→8 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.5→2.61 Å
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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