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- PDB-1eag: Secreted aspartic proteinase (SAP2) from Candida albicans complex... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1eag | ||||||
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Title | Secreted aspartic proteinase (SAP2) from Candida albicans complexed with A70450 | ||||||
![]() | ASPARTIC PROTEINASE (SAP2 GENE PRODUCT) | ||||||
![]() | HYDROLASE/HYDROLASE INHIBITOR / SAP2 / CANDIDA ALBICANS / HYDROLASE-HYDROLASE INHIBITOR COMPLEX / ASPARTIC PROTEASE | ||||||
Function / homology | ![]() : / protein catabolic process => GO:0030163 / candidapepsin / : / signal peptide processing / fungal-type cell wall organization / adhesion of symbiont to host / : / fungal-type cell wall / protein metabolic process ...: / protein catabolic process => GO:0030163 / candidapepsin / : / signal peptide processing / fungal-type cell wall organization / adhesion of symbiont to host / : / fungal-type cell wall / protein metabolic process / protein catabolic process / extracellular vesicle / aspartic-type endopeptidase activity / proteolysis / extracellular region / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Cutfield, J.F. / Cutfield, S.M. | ||||||
![]() | ![]() Title: The crystal structure of a major secreted aspartic proteinase from Candida albicans in complexes with two inhibitors. Authors: Cutfield, S.M. / Dodson, E.J. / Anderson, B.F. / Moody, P.C.E. / Marshall, C.J. / Sullivan, P.A. / Cutfield, J.F. #1: ![]() Title: Crystallization of Inhibited Aspartic Proteinase from Candida Albicans Authors: Cutfield, S. / Marshall, C. / Moody, P. / Sullivan, P. / Cutfield, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 75.2 KB | Display | ![]() |
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PDB format | ![]() | 60.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 460 KB | Display | ![]() |
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Full document | ![]() | 472.2 KB | Display | |
Data in XML | ![]() | 9.8 KB | Display | |
Data in CIF | ![]() | 14.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 36357.723 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() References: UniProt: P28871, UniProt: P0CS83*PLUS, candidapepsin |
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#2: Chemical | ChemComp-A70 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.52 Å3/Da / Density % sol: 50 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / pH: 6.2 / Method: vapor diffusion, hanging drop / Details: Cutfield, S., (1993) J.Mol.Biol., 234, 1266. | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE / Date: 1993 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 24302 / % possible obs: 98 % / Redundancy: 7.5 % / Rmerge(I) obs: 0.072 |
Reflection | *PLUS Highest resolution: 2.05 Å |
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Processing
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Refinement | Resolution: 2.1→8 Å / σ(F): 0 Details: LOOP RESIDUES A 284, A 285, AND A 286 HAVE WEAK, DISORDERED DENSITY AND THEIR COORDINATES HAVE BEEN OMITTED.
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Displacement parameters | Biso mean: 32.4 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.1→8 Å
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Refine LS restraints |
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Software | *PLUS Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.195 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |