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- PDB-1bon: THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BR... -

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Basic information

Entry
Database: PDB / ID: 1bon
TitleTHREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN
Components
  • BOMBYXIN-II,BOMBYXIN A-2
  • BOMBYXIN-II,BOMBYXIN A-6
KeywordsHORMONE / Structural Proteomics in Europe / SPINE / Structural Genomics
Function / homology
Function and homology information


growth factor activity / hormone activity / extracellular space
Similarity search - Function
Bombyxin / Bombyxin A / Insulin family / Insulin-like / Insulin/IGF/Relaxin family / Insulin / insulin-like growth factor / relaxin family. / Insulin, conserved site / Insulin family signature. / Insulin-like superfamily
Similarity search - Domain/homology
Bombyxin A-2 / Bombyxin A-6
Similarity search - Component
Biological speciesBombyx mori (domestic silkworm)
MethodSOLUTION NMR
AuthorsNagata, K. / Hatanaka, H. / Kohda, D. / Inagaki, F. / Structural Proteomics in Europe (SPINE)
CitationJournal: J.Mol.Biol. / Year: 1995
Title: Three-dimensional solution structure of bombyxin-II an insulin-like peptide of the silkmoth Bombyx mori: structural comparison with insulin and relaxin.
Authors: Nagata, K. / Hatanaka, H. / Kohda, D. / Kataoka, H. / Nagasawa, H. / Isogai, A. / Ishizaki, H. / Suzuki, A. / Inagaki, F.
History
DepositionJul 21, 1994Processing site: BNL
Revision 1.0Jan 26, 1995Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 2.0Dec 25, 2019Group: Derived calculations / Other / Polymer sequence
Category: entity_poly / pdbx_database_status ...entity_poly / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_mod_residue / pdbx_struct_oper_list / struct_conn
Item: _entity_poly.pdbx_seq_one_letter_code_can / _pdbx_database_status.process_site ..._entity_poly.pdbx_seq_one_letter_code_can / _pdbx_database_status.process_site / _pdbx_struct_mod_residue.parent_comp_id / _struct_conn.pdbx_leaving_atom_flag
Revision 2.1Oct 30, 2024Group: Data collection / Database references / Structure summary
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / pdbx_modification_feature
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: BOMBYXIN-II,BOMBYXIN A-2
B: BOMBYXIN-II,BOMBYXIN A-6


Theoretical massNumber of molelcules
Total (without water)5,3152
Polymers5,3152
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_5551
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)10 / -
Representative

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Components

#1: Protein/peptide BOMBYXIN-II,BOMBYXIN A-2


Mass: 2188.589 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Bombyx mori (domestic silkworm) / References: UniProt: P15411
#2: Protein/peptide BOMBYXIN-II,BOMBYXIN A-6


Mass: 3126.484 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Bombyx mori (domestic silkworm) / References: UniProt: P26729
Has protein modificationY

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameClassification
X-PLORmodel building
X-PLORrefinement
X-PLORphasing
NMR softwareName: X-PLOR / Developer: BRUNGER / Classification: refinement
NMR ensembleConformers submitted total number: 10

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