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Open data
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Basic information
Entry | Database: PDB / ID: 1bna | ||||||||||||||||||
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Title | STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICS | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / B-DNA / DOUBLE HELIX | Function / homology | DNA / DNA (> 10) | ![]() Method | ![]() ![]() Drew, H.R. / Wing, R.M. / Takano, T. / Broka, C. / Tanaka, S. / Itakura, K. / Dickerson, R.E. | ![]() ![]() Title: Structure of a B-DNA dodecamer: conformation and dynamics. Authors: Drew, H.R. / Wing, R.M. / Takano, T. / Broka, C. / Tanaka, S. / Itakura, K. / Dickerson, R.E. #1: ![]() Title: Kinematic Model for B-DNA Authors: Dickerson, R.E. / Drew, H.R. #2: ![]() Title: Structure of a B-DNA Dodecamer. II. Influence of Base Sequence on Helix Structure Authors: Dickerson, R.E. / Drew, H.R. #3: ![]() Title: Structure of a B-DNA Dodecamer. III. Geometry of Hydration Authors: Drew, H.R. / Dickerson, R.E. #4: ![]() Title: Crystal Structure Analysis of a Complete Turn of B-DNA Authors: Wing, R. / Drew, H.R. / Takano, T. / Broka, C. / Tanaka, S. / Itakura, K. / Dickerson, R.E. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 24.1 KB | Display | ![]() |
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PDB format | ![]() | 15.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 366.3 KB | Display | ![]() |
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Full document | ![]() | 375.6 KB | Display | |
Data in XML | ![]() | 4.5 KB | Display | |
Data in CIF | ![]() | 6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: DNA chain | Mass: 3663.392 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.27 Å3/Da / Density % sol: 45.79 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 290 K / Method: vapor diffusion / Details: VAPOR DIFFUSION, temperature 290.00K | ||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS Details: Watson, J.D., (1953) Nature, 171, 737. | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Detector | Detector: DIFFRACTOMETER |
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Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.9→8 Å / Num. obs: 5534 |
Reflection | *PLUS Highest resolution: 1.9 Å |
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Processing
Software | Name: JACK-LEVITT / Classification: refinement | ||||||||||||
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Refinement | Resolution: 1.9→8 Å / σ(I): 2 /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 1.9→8 Å
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Refinement | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 8 Å / σ(I): 2 / Rfactor all: 0.239 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |