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- PDB-1d99: STRUCTURAL FEATURES AND HYDRATION OF A DODECAMER DUPLEX CONTAININ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1d99 | ||||||||||||||||||
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Title | STRUCTURAL FEATURES AND HYDRATION OF A DODECAMER DUPLEX CONTAINING TWO C.A MISPAIRS | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / B-DNA / DOUBLE HELIX / MISMATCHED | Function / homology | DNA / DNA (> 10) | ![]() Method | ![]() ![]() Hunter, W.N. / Brown, T. / Kennard, O. | ![]() ![]() Title: Structural features and hydration of a dodecamer duplex containing two C.A mispairs. Authors: Hunter, W.N. / Brown, T. / Kennard, O. #1: ![]() Title: Structure of an Adenine. Cytosine Base Pair in DNA and Its Implications for Mismatch Repair Authors: Hunter, W.N. / Brown, T. / Anand, N.N. / Kennard, O. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 21.6 KB | Display | ![]() |
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PDB format | ![]() | 13.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 324.2 KB | Display | ![]() |
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Full document | ![]() | 330.8 KB | Display | |
Data in XML | ![]() | 2.4 KB | Display | |
Data in CIF | ![]() | 3.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: DNA chain | Mass: 3647.393 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.35 Å3/Da / Density % sol: 47.64 % | |||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 277 K / Method: vapor diffusion / pH: 7.4 / Details: pH 7.40, VAPOR DIFFUSION, temperature 277.00K | |||||||||||||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS pH: 7.5 / Method: vapor diffusionDetails: referred to 'Wing, R..', (1980) 'Nature', 287, 755-758 | |||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 277 K |
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Detector | Detector: DIFFRACTOMETER |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 2.5 Å / Num. obs: 2452 / Observed criterion σ(F): 2 |
Reflection | *PLUS Highest resolution: 2.5 Å |
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Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Resolution: 2.5→8 Å / σ(I): 2 /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 2.5→8 Å
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Refinement | *PLUS Highest resolution: 2.5 Å / Lowest resolution: 8 Å / σ(I): 2 / Num. reflection obs: 2029 / Rfactor obs: 0.19 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |