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Open data
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Basic information
Entry | Database: PDB / ID: 114d | ||||||||||||||||||
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Title | INOSINE-ADENINE BASE PAIRS IN A B-DNA DUPLEX | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / B-DNA / DOUBLE HELIX / MODIFIED / MISMATCHED | Function / homology | DNA / DNA (> 10) | ![]() Method | ![]() ![]() Corfield, P.W.R. / Hunter, W.N. / Brown, T. / Robinson, P. / Kennard, O. | ![]() ![]() Title: Inosine.adenine base pairs in a B-DNA duplex. Authors: Corfield, P.W. / Hunter, W.N. / Brown, T. / Robinson, P. / Kennard, O. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 21 KB | Display | ![]() |
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PDB format | ![]() | 13.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 324.1 KB | Display | ![]() |
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Full document | ![]() | 328.1 KB | Display | |
Data in XML | ![]() | 1.9 KB | Display | |
Data in CIF | ![]() | 3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: DNA chain | Mass: 3672.403 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.41 Å3/Da / Density % sol: 48.86 % | ||||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion, sitting drop / pH: 7.4 / Details: pH 7.40, VAPOR DIFFUSION, SITTING DROP | ||||||||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS pH: 7.4 / Method: unknown | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 277 K |
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Detector | Type: SYNTEX P21 / Detector: DIFFRACTOMETER |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 2.5 Å / Num. obs: 2207 / Observed criterion σ(I): 1 |
Reflection | *PLUS Highest resolution: 2.5 Å / Observed criterion σ(I): 1 / Rmerge(I) obs: 0.07 |
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Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Resolution: 2.5→8 Å / σ(I): 1 /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 2.5→8 Å
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Software | *PLUS Name: NUCLSQ / Classification: refinement | ||||||||||||
Refinement | *PLUS Highest resolution: 2.5 Å / Lowest resolution: 8 Å / σ(I): 1 / Rfactor obs: 0.19 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS | ||||||||||||
Refine LS restraints | *PLUS
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