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- PDB-1dn9: STRUCTURE OF AN ALTERNATING-B DNA HELIX AND ITS RELATIONSHIP TO A... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1dn9 | ||||||||||||||||||
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Title | STRUCTURE OF AN ALTERNATING-B DNA HELIX AND ITS RELATIONSHIP TO A-TRACT DNA | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / B-DNA / DOUBLE HELIX | Function / homology | DNA / DNA (> 10) | ![]() Method | ![]() ![]() Yoon, C. / Dickerson, R.E. | ![]() ![]() Title: Structure of an alternating-B DNA helix and its relationship to A-tract DNA. Authors: Yoon, C. / Prive, G.G. / Goodsell, D.S. / Dickerson, R.E. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 23.1 KB | Display | ![]() |
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PDB format | ![]() | 14.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 367.5 KB | Display | ![]() |
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Full document | ![]() | 382 KB | Display | |
Data in XML | ![]() | 5 KB | Display | |
Data in CIF | ![]() | 6.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: DNA chain | Mass: 3662.404 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.08 Å3/Da / Density % sol: 40.82 % | |||||||||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion / Details: VAPOR DIFFUSION | |||||||||||||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS Method: vapor diffusion | |||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 279 K |
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Detector | Type: SDMS / Detector: AREA DETECTOR |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2.2→8 Å / Num. obs: 2994 |
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Processing
Software | Name: ![]() | ||||||||||||
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Refinement | Resolution: 2.2→8 Å / σ(F): 0.5 /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 2.2→8 Å
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Refinement | *PLUS σ(F): 0.5 / Highest resolution: 2.2 Å / Lowest resolution: 8 Å / Rfactor obs: 0.189 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS | ||||||||||||
Refine LS restraints | *PLUS Type: x_bond_d / Dev ideal: 0.718 |