+Open data
-Basic information
Entry | Database: PDB / ID: 1bh9 | ||||||
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Title | HTAFII18/HTAFII28 HETERODIMER CRYSTAL STRUCTURE WITH BOUND PCMBS | ||||||
Components |
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Keywords | TRANSCRIPTION REGULATION COMPLEX / HTAFII18 / HISTONE FOLD / TATA BINDING PROTEIN | ||||||
Function / homology | Function and homology information positive regulation by host of viral transcription / nuclear vitamin D receptor binding / nuclear thyroid hormone receptor binding / RNA polymerase II general transcription initiation factor activity / transcription factor TFIID complex / HIV Transcription Initiation / RNA Polymerase II HIV Promoter Escape / Transcription of the HIV genome / RNA Polymerase II Promoter Escape / RNA Polymerase II Transcription Pre-Initiation And Promoter Opening ...positive regulation by host of viral transcription / nuclear vitamin D receptor binding / nuclear thyroid hormone receptor binding / RNA polymerase II general transcription initiation factor activity / transcription factor TFIID complex / HIV Transcription Initiation / RNA Polymerase II HIV Promoter Escape / Transcription of the HIV genome / RNA Polymerase II Promoter Escape / RNA Polymerase II Transcription Pre-Initiation And Promoter Opening / RNA Polymerase II Transcription Initiation / RNA Polymerase II Transcription Initiation And Promoter Clearance / RNA polymerase II transcribes snRNA genes / positive regulation of transcription initiation by RNA polymerase II / RNA polymerase II preinitiation complex assembly / RNA Polymerase II Pre-transcription Events / TBP-class protein binding / transcription initiation at RNA polymerase II promoter / DNA-templated transcription initiation / mRNA transcription by RNA polymerase II / Regulation of TP53 Activity through Phosphorylation / transcription by RNA polymerase II / transcription coactivator activity / protein heterodimerization activity / nucleolus / Golgi apparatus / DNA binding / nucleoplasm / nucleus Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MIR / Resolution: 2.6 Å | ||||||
Authors | Birck, C. / Poch, O. / Romier, C. / Ruff, M. / Mengus, G. / Lavigne, A.-C. / Davidson, I. / Moras, D. | ||||||
Citation | Journal: Cell(Cambridge,Mass.) / Year: 1998 Title: Human TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family. Authors: Birck, C. / Poch, O. / Romier, C. / Ruff, M. / Mengus, G. / Lavigne, A.C. / Davidson, I. / Moras, D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bh9.cif.gz | 40.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bh9.ent.gz | 28.1 KB | Display | PDB format |
PDBx/mmJSON format | 1bh9.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bh/1bh9 ftp://data.pdbj.org/pub/pdb/validation_reports/bh/1bh9 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein/peptide | Mass: 5266.026 Da / Num. of mol.: 1 / Fragment: RESIDUES 31 - 75 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Cell: HELA / Cellular location: NUCLEUSCell nucleus / Plasmid: PET15B / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21 (DE3) / References: UniProt: Q15543 |
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#2: Protein | Mass: 10121.784 Da / Num. of mol.: 1 / Fragment: RESIDUES 113 - 201 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Cell: HELA / Cellular location: NUCLEUSCell nucleus / Plasmid: PET15B / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21 (DE3) / References: UniProt: Q15544 |
#3: Chemical | ChemComp-PMB / |
#4: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.5 Å3/Da / Density % sol: 51 % | ||||||||||||||||||||||||||||||
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Crystal grow | pH: 7.5 / Details: pH 7.5 | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 7.9 / Method: vapor diffusion, hanging dropDetails: drop solution was mixed with an equal volume of reservoir solution | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: BM02 / Wavelength: 1.003 |
Detector | Detector: CCD / Date: Jan 1, 1998 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.003 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→20 Å / Num. obs: 5119 / % possible obs: 99.3 % / Observed criterion σ(I): 0 / Redundancy: 6.9 % / Biso Wilson estimate: 50 Å2 / Rsym value: 0.088 / Net I/σ(I): 26.8 |
Reflection shell | Resolution: 2.6→2.8 Å / Redundancy: 6.5 % / Mean I/σ(I) obs: 15.3 / Rsym value: 0.173 / % possible all: 99.7 |
Reflection | *PLUS Num. measured all: 35105 / Rmerge(I) obs: 0.088 |
Reflection shell | *PLUS % possible obs: 99.7 % / Rmerge(I) obs: 0.173 |
-Processing
Software |
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Refinement | Method to determine structure: MIR / Resolution: 2.6→8 Å / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 2
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Displacement parameters | Biso mean: 42.9 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→8 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.6→2.8 Å / Total num. of bins used: 10
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Xplor file |
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