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- PDB-1bgd: CRYSTAL STRUCTURE OF CANINE AND BOVINE GRANULOCYTE-COLONY STIMULA... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1bgd | ||||||
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Title | CRYSTAL STRUCTURE OF CANINE AND BOVINE GRANULOCYTE-COLONY STIMULATING FACTOR (G-CSF) | ||||||
![]() | GRANULOCYTE COLONY-STIMULATING FACTOR | ||||||
![]() | CYTOKINE | ||||||
Function / homology | ![]() granulocyte colony-stimulating factor receptor binding / positive regulation of myeloid cell differentiation / cytokine activity / growth factor activity / immune response / positive regulation of cell population proliferation / extracellular space Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Lovejoy, B. / Cascio, D. / Eisenberg, D. | ||||||
![]() | ![]() Title: Crystal structure of canine and bovine granulocyte-colony stimulating factor (G-CSF). Authors: Lovejoy, B. / Cascio, D. / Eisenberg, D. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 48.4 KB | Display | ![]() |
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PDB format | ![]() | 35.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 413.5 KB | Display | ![]() |
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Full document | ![]() | 416.7 KB | Display | |
Data in XML | ![]() | 8.7 KB | Display | |
Data in CIF | ![]() | 11.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Atom site foot note | 1: RESIDUE 129 IS A CIS PROLINE. |
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Components
#1: Protein | Mass: 18871.883 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.3 Å3/Da / Density % sol: 46.42 % | ||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Method: vapor diffusion, hanging drop / pH: 6.54 | ||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.3 Å / Lowest resolution: 30 Å / Num. obs: 6830 / % possible obs: 88.2 % / Num. measured all: 18417 / Rmerge(I) obs: 0.044 |
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Processing
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Refinement | Resolution: 2.3→7 Å / σ(F): 1 /
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Refinement step | Cycle: LAST / Resolution: 2.3→7 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 2.3 Å / Lowest resolution: 7 Å / Num. reflection obs: 6532 / σ(F): 1 / Rfactor obs: 0.207 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d |