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Open data
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Basic information
Entry | Database: PDB / ID: 1a4p | ||||||
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Title | P11 (S100A10), LIGAND OF ANNEXIN II | ||||||
![]() | S100A10 | ||||||
![]() | CALCIUM/PHOSPHOLIPID BINDING PROTEIN / S100 FAMILY / EF-HAND PROTEIN / LIGAND OF ANNEXIN II / CALCIUM-PHOSPHOLIPID BINDING PROTEIN complex | ||||||
Function / homology | ![]() AnxA2-p11 complex / membrane raft assembly / positive regulation of plasma membrane repair / positive regulation of plasminogen activation / vesicle budding from membrane / plasma membrane protein complex / Dissolution of Fibrin Clot / positive regulation of exocytosis / positive regulation of focal adhesion assembly / regulation of neurogenesis ...AnxA2-p11 complex / membrane raft assembly / positive regulation of plasma membrane repair / positive regulation of plasminogen activation / vesicle budding from membrane / plasma membrane protein complex / Dissolution of Fibrin Clot / positive regulation of exocytosis / positive regulation of focal adhesion assembly / regulation of neurogenesis / positive regulation of substrate adhesion-dependent cell spreading / positive regulation of stress fiber assembly / positive regulation of GTPase activity / protein localization to plasma membrane / mRNA transcription by RNA polymerase II / nuclear matrix / RNA polymerase II transcription regulator complex / calcium-dependent protein binding / collagen-containing extracellular matrix / transmembrane transporter binding / calcium ion binding / cell surface / protein homodimerization activity / positive regulation of transcription by RNA polymerase II / extracellular space / extracellular exosome / extracellular region / plasma membrane / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Rety, S. / Sopkova, J. / Renouard, M. / Osterloh, D. / Gerke, V. / Russo-Marie, F. / Lewit-Bentley, A. | ||||||
![]() | ![]() Title: The crystal structure of a complex of p11 with the annexin II N-terminal peptide. Authors: Rety, S. / Sopkova, J. / Renouard, M. / Osterloh, D. / Gerke, V. / Tabaries, S. / Russo-Marie, F. / Lewit-Bentley, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 45.5 KB | Display | ![]() |
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PDB format | ![]() | 36.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 370.9 KB | Display | ![]() |
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Full document | ![]() | 378.1 KB | Display | |
Data in XML | ![]() | 5.9 KB | Display | |
Data in CIF | ![]() | 8.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.85907, -0.47311, -0.19537), Vector: |
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Components
#1: Protein | Mass: 11088.940 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.53 Å3/Da / Density % sol: 51 % | ||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion / pH: 7.5 Details: 15 MG/ML PROTEIN WERE CRYSTALLIZED BY VAPOR DIFFUSION AGAINST 20% PEG 4000, 10% 2-PROPANOL, 100MM HEPES, PH=7.5, vapor diffusion | ||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop / Details: drop:reservoir=1:1 | ||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 280 K |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Jul 18, 1997 / Details: FOCUSSING MONOCHROMATOR |
Radiation | Monochromator: GE(111) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.37 Å / Relative weight: 1 |
Reflection | Resolution: 2.25→62 Å / Num. obs: 10769 / % possible obs: 98.4 % / Observed criterion σ(I): 0 / Redundancy: 6.15 % / Rsym value: 0.047 / Net I/σ(I): 14.9 |
Reflection shell | Resolution: 2.25→2.33 Å / Redundancy: 3.5 % / Mean I/σ(I) obs: 3.5 / Rsym value: 0.168 / % possible all: 97.1 |
Reflection | *PLUS Num. obs: 10957 / Num. measured all: 67368 / Rmerge(I) obs: 0.032 |
Reflection shell | *PLUS % possible obs: 97.1 % / Rmerge(I) obs: 0.168 |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 36.1 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.3 Å / Luzzati d res low obs: 20 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.25→20 Å
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Refine LS restraints |
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Software | *PLUS Name: REFMAC / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor all: 0.246 / Rfactor obs: 0.227 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |