+Open data
-Basic information
Entry | Database: PDB / ID: 1a22 | ||||||
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Title | HUMAN GROWTH HORMONE BOUND TO SINGLE RECEPTOR | ||||||
Components |
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Keywords | COMPLEX (HORMONE/RECEPTOR) / COMPLEX (HORMONE-RECEPTOR) / PITUITARY / HORMONE / COMPLEX (HORMONE-RECEPTOR) complex | ||||||
Function / homology | Function and homology information growth hormone receptor activity / regulation of response to nutrient levels / growth hormone receptor complex / bone maturation / prolactin receptor binding / positive regulation of growth / taurine metabolic process / animal organ development / positive regulation of activation of Janus kinase activity / response to gravity ...growth hormone receptor activity / regulation of response to nutrient levels / growth hormone receptor complex / bone maturation / prolactin receptor binding / positive regulation of growth / taurine metabolic process / animal organ development / positive regulation of activation of Janus kinase activity / response to gravity / cartilage development involved in endochondral bone morphogenesis / positive regulation of multicellular organism growth / positive regulation of glucose transmembrane transport / hormone metabolic process / proline-rich region binding / positive regulation of insulin-like growth factor receptor signaling pathway / growth hormone receptor binding / response to food / growth hormone receptor signaling pathway / response to cycloheximide / cytokine binding / Prolactin receptor signaling / growth factor binding / peptide hormone binding / cell surface receptor signaling pathway via JAK-STAT / regulation of multicellular organism growth / Synthesis, secretion, and deacylation of Ghrelin / Growth hormone receptor signaling / response to glucocorticoid / positive regulation of tyrosine phosphorylation of STAT protein / cellular response to hormone stimulus / hormone-mediated signaling pathway / SH2 domain binding / response to interleukin-1 / response to nutrient levels / insulin-like growth factor receptor signaling pathway / cytokine activity / endosome lumen / positive regulation of cell differentiation / positive regulation of receptor signaling pathway via JAK-STAT / growth factor activity / positive regulation of MAP kinase activity / hormone activity / cytoplasmic ribonucleoprotein granule / receptor internalization / endocytosis / cytokine-mediated signaling pathway / cellular response to insulin stimulus / positive regulation of peptidyl-tyrosine phosphorylation / response to estradiol / protein phosphatase binding / positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / receptor complex / external side of plasma membrane / neuronal cell body / lipid binding / protein kinase binding / cell surface / protein homodimerization activity / extracellular space / extracellular region / membrane / identical protein binding / metal ion binding / plasma membrane / cytosol Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 2.6 Å | ||||||
Authors | De Vos, A.M. / Ultsch, M. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1998 Title: Structural and functional analysis of the 1:1 growth hormone:receptor complex reveals the molecular basis for receptor affinity. Authors: Clackson, T. / Ultsch, M.H. / Wells, J.A. / de Vos, A.M. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Crystals of Human Growth Hormone-Receptor Complexes. Extracellular Domains of the Growth Hormone and Prolactin Receptors and a Hormone Mutant Designed to Prevent Receptor Dimerization Authors: Ultsch, M. / De Vos, A.M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1a22.cif.gz | 85.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1a22.ent.gz | 67.9 KB | Display | PDB format |
PDBx/mmJSON format | 1a22.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/a2/1a22 ftp://data.pdbj.org/pub/pdb/validation_reports/a2/1a22 | HTTPS FTP |
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-Related structure data
Related structure data | 3hhrS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 22252.135 Da / Num. of mol.: 1 / Mutation: G120R Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Production host: Escherichia coli (E. coli) / References: UniProt: P01241 |
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#2: Protein | Mass: 27409.771 Da / Num. of mol.: 1 / Fragment: EXTRACELLULAR DOMAIN Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Production host: Escherichia coli (E. coli) / References: UniProt: P10912 |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 6 |
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-Sample preparation
Crystal | Density Matthews: 2.63 Å3/Da / Density % sol: 53.22 % | ||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 6.5 / Details: pH 6.5 | ||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, sitting drop / Details: Ultsch, M., (1993) J.Mol.Biol., 231, 1133. | ||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 287 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU RUH2R / Wavelength: 1.5418 |
Detector | Type: ENRAF-NONIUS FAST / Detector: DIFFRACTOMETER / Date: May 1, 1991 |
Radiation | Monochromator: NI FILTER / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→10 Å / Num. obs: 14489 / % possible obs: 85 % / Redundancy: 4 % / Rmerge(I) obs: 0.063 |
Reflection shell | Resolution: 2.6→2.7 Å / Rmerge(I) obs: 0.116 / Mean I/σ(I) obs: 7.1 / % possible all: 78 |
Reflection | *PLUS Num. measured all: 51354 |
Reflection shell | *PLUS % possible obs: 78 % / Num. unique obs: 1552 / Num. measured obs: 3934 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 3HHR Resolution: 2.6→7 Å / Data cutoff high absF: 100000 / Data cutoff low absF: 1 / Isotropic thermal model: INDIVIDUAL RESTRAINED / σ(F): 0
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Displacement parameters | Biso mean: 30.8 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→7 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.6→2.71 Å / Total num. of bins used: 8 /
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell | *PLUS Rfactor Rwork: 0.281 |