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データを開く
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基本情報
登録情報 | データベース: PDB / ID: 134d | ||||||
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タイトル | SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES | ||||||
![]() | DNA TRIPLEX | ||||||
![]() | DNA / TRIPLEX | ||||||
機能・相同性 | DNA / DNA (> 10)![]() | ||||||
生物種 | synthetic construct (人工物) | ||||||
手法 | 溶液NMR / RESTRAINED MOLECULAR DYNAMICS, DISTANCE GEOMETRY | ||||||
![]() | Patel, D.J. / Radhakrishnan, I. | ||||||
![]() | ![]() タイトル: Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples. 著者: Radhakrishnan, I. / Patel, D.J. #1: ![]() タイトル: Solution/structure of an intramolecular purine-purine-pyrimidine DNA triplex. 著者: Radhakrishnan, I. / Patel, D.J. | ||||||
履歴 |
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構造の表示
構造ビューア | 分子: ![]() ![]() |
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ダウンロードとリンク
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ダウンロード
PDBx/mmCIF形式 | ![]() | 26.4 KB | 表示 | ![]() |
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PDB形式 | ![]() | 17.5 KB | 表示 | ![]() |
PDBx/mmJSON形式 | ![]() | ツリー表示 | ![]() | |
その他 | ![]() |
-検証レポート
文書・要旨 | ![]() | 301.7 KB | 表示 | ![]() |
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文書・詳細版 | ![]() | 309.7 KB | 表示 | |
XML形式データ | ![]() | 2.6 KB | 表示 | |
CIF形式データ | ![]() | 3 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
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リンク
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集合体
登録構造単位 | ![]()
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NMR アンサンブル |
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要素
#1: DNA鎖 | 分子量: 9552.122 Da / 分子数: 1 / 由来タイプ: 合成 / 由来: (合成) synthetic construct (人工物) / ![]() |
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-実験情報
-実験
実験 | 手法: 溶液NMR |
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解析
ソフトウェア |
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NMR software | 名称: ![]() | |||||||||
精密化 | 手法: RESTRAINED MOLECULAR DYNAMICS, DISTANCE GEOMETRY / ソフトェア番号: 1 詳細: RESTRAINED MOLECULAR DYNAMICS CALCULATIONS WERE DONE ONIDEALIZED A'- AND B-FORM STARTING STRUCTURES. ONLY THE TRIPLEX REGION AND THE FIRST AND LAST RESIDUES OF EACH OF THE TWO LOOPS IN THE ...詳細: RESTRAINED MOLECULAR DYNAMICS CALCULATIONS WERE DONE ONIDEALIZED A'- AND B-FORM STARTING STRUCTURES. ONLY THE TRIPLEX REGION AND THE FIRST AND LAST RESIDUES OF EACH OF THE TWO LOOPS IN THE SEQUENCE WERE CONSIDERED. THE REFINEMENT WAS CONDUCTED IN TWO STAGES. IN THE FIRST STAGE, SIX STRUCTURES WERE CALCULATED (THREE FROM EACH STARTING STRUCTURE) USING DISTANCE RESTRAINTS. IN THE SECOND STAGE, TWO OF THE SIX STRUCTURES WERE REFINED DIRECTLY AGAINST PRIMARY NOE DATA. THE R(1/6) VALUE WAS USED TO MONITOR THE REFINEMENT DURING THIS STAGE. THE FINAL R(1/6) VALUES FOR THE TWO AVERAGED MINIMIZED STRUCTURES WERE 0.04 AND 0.045. | |||||||||
NMRアンサンブル | 登録したコンフォーマーの数: 1 | |||||||||
ソフトウェア | *PLUS 名称: ![]() | |||||||||
拘束条件 | *PLUS
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