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- EMDB-20077: Subunit joining exposes nascent pre-40S rRNA for processing and q... -

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基本情報

登録情報
データベース: EMDB / ID: EMD-20077
タイトルSubunit joining exposes nascent pre-40S rRNA for processing and quality control
マップデータ
試料
  • 複合体: 60S subunit of 80S-like ribosome
    • タンパク質・ペプチド: x 45種
    • RNA: x 3種
キーワード80S-like complex / 60S / RIBOSOME
機能・相同性
機能・相同性情報


regulation of polysaccharide biosynthetic process / transporter complex / cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / response to cycloheximide / lipopolysaccharide transport / SRP-dependent cotranslational protein targeting to membrane / GTP hydrolysis and joining of the 60S ribosomal subunit / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / Formation of a pool of free 40S subunits ...regulation of polysaccharide biosynthetic process / transporter complex / cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / response to cycloheximide / lipopolysaccharide transport / SRP-dependent cotranslational protein targeting to membrane / GTP hydrolysis and joining of the 60S ribosomal subunit / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / Formation of a pool of free 40S subunits / preribosome, large subunit precursor / L13a-mediated translational silencing of Ceruloplasmin expression / Gram-negative-bacterium-type cell outer membrane assembly / translational elongation / ribosomal large subunit export from nucleus / 90S preribosome / regulation of translational fidelity / protein-RNA complex assembly / translational termination / maturation of LSU-rRNA / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal large subunit biogenesis / macroautophagy / translational initiation / modification-dependent protein catabolic process / protein tag activity / maintenance of translational fidelity / cell outer membrane / rRNA processing / ribosome biogenesis / 5S rRNA binding / ribosomal large subunit assembly / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / protein ubiquitination / negative regulation of translation / rRNA binding / structural constituent of ribosome / ribosome / translation / response to antibiotic / mRNA binding / ubiquitin protein ligase binding / nucleolus / RNA binding / zinc ion binding / nucleus / cytosol / cytoplasm
類似検索 - 分子機能
60s Acidic ribosomal protein / 60S acidic ribosomal protein P0 / : / LptD, C-terminal / LPS-assembly protein LptD / : / LPS transport system D / Organic solvent tolerance-like, N-terminal / LptA/(LptD N-terminal domain) LPS transport protein / Group II dsDNA virus coat/capsid protein ...60s Acidic ribosomal protein / 60S acidic ribosomal protein P0 / : / LptD, C-terminal / LPS-assembly protein LptD / : / LPS transport system D / Organic solvent tolerance-like, N-terminal / LptA/(LptD N-terminal domain) LPS transport protein / Group II dsDNA virus coat/capsid protein / 50S ribosomal protein L10, insertion domain superfamily / : / 60S ribosomal protein L10P, insertion domain / Insertion domain in 60S ribosomal protein L10P / Ribosomal protein L1, conserved site / Ribosomal protein L1 signature. / Ribosomal protein L1 / Ribosomal protein L29e / Ribosomal L29e protein family / Ribosomal protein L22e / Ribosomal protein L22e superfamily / Ribosomal L22e protein family / Ribosomal protein L27e, conserved site / Ribosomal protein L27e signature. / Ribosomal protein L10e, conserved site / Ribosomal protein L10e signature. / Ribosomal protein L38e / Ribosomal protein L38e superfamily / Ribosomal L38e protein family / Ribosomal protein L10e / Ribosomal protein L44e signature. / Ribosomal protein L24e, conserved site / Ribosomal protein L24e signature. / Ribosomal protein L19/L19e conserved site / Ribosomal protein L19, eukaryotic / Ribosomal protein L19e signature. / Ribosomal protein L1, 3-layer alpha/beta-sandwich / : / 60S ribosomal protein L18a/ L20, eukaryotes / Ribosomal protein L6e signature. / : / Ribosomal protein L44e / Ribosomal protein L44 / Ribosomal protein L34e, conserved site / Ribosomal protein L34e signature. / Ribosomal protein L5 eukaryotic, C-terminal / 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a / Ribosomal L18 C-terminal region / Ribosomal L40e family / Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A / Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A / Ribosomal protein 60S L18 and 50S L18e / Ribosomal_L40e / Ribosomal protein L40e / Ribosomal protein L40e superfamily / Ribosomal protein L18/L18-A/B/e, conserved site / Ribosomal protein L18e signature. / Ribosomal protein L23/L25, N-terminal / : / Ribosomal protein L23, N-terminal domain / Eukaryotic Ribosomal Protein L27, KOW domain / Ribosomal Protein L6, KOW domain / Ribosomal protein L36e signature. / Ribosomal protein L35Ae, conserved site / Ribosomal protein L35Ae signature. / Ribosomal protein L27e / Ribosomal protein L27e superfamily / Ribosomal L27e protein family / Ribosomal protein L39e, conserved site / Ribosomal protein L39e signature. / 60S ribosomal protein L19 / Ribosomal protein L1-like / Ribosomal protein L1/ribosomal biogenesis protein / Ribosomal protein L1p/L10e family / : / Ribosomal protein L13, eukaryotic/archaeal / Ribosomal protein L6e / Ribosomal protein L34Ae / Ribosomal protein L34e / Ribosomal protein L7A/L8 / 60S ribosomal protein L6E / 60S ribosomal protein L35 / Ribosomal protein L19e, C-terminal domain / Ribosomal protein L18e / Ribosomal_L19e / 60S ribosomal protein L4, C-terminal domain / 60S ribosomal protein L4 C-terminal domain / Ribosomal protein L19/L19e / Ribosomal protein L7, eukaryotic / Ribosomal protein L19/L19e, domain 1 / Ribosomal protein L31e, conserved site / Ribosomal protein L19/L19e superfamily / Ribosomal protein L19e, N-terminal domain / Ribosomal protein L31e signature. / Ribosomal protein L30, N-terminal / Ribosomal L30 N-terminal domain / Ribosomal protein L37ae / Ribosomal L37ae protein family / Ribosomal protein L36e / Ribosomal protein L36e domain superfamily
類似検索 - ドメイン・相同性
Large ribosomal subunit protein uL15 / Large ribosomal subunit protein eL24A / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein eL39 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL30A / Large ribosomal subunit protein uL6A / Large ribosomal subunit protein uL22A / Large ribosomal subunit protein uL24A / Large ribosomal subunit protein eL33A ...Large ribosomal subunit protein uL15 / Large ribosomal subunit protein eL24A / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein eL39 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL30A / Large ribosomal subunit protein uL6A / Large ribosomal subunit protein uL22A / Large ribosomal subunit protein uL24A / Large ribosomal subunit protein eL33A / Large ribosomal subunit protein eL36A / Large ribosomal subunit protein eL29 / Large ribosomal subunit protein eL15A / Large ribosomal subunit protein eL22A / Large ribosomal subunit protein eL27A / Large ribosomal subunit protein eL31A / Ubiquitin-ribosomal protein eL40A fusion protein / Large ribosomal subunit protein eL20A / Large ribosomal subunit protein eL43A / Large ribosomal subunit protein eL42A / Large ribosomal subunit protein uL14A / Large ribosomal subunit protein uL1A / Large ribosomal subunit protein uL2A / Large ribosomal subunit protein eL18A / Large ribosomal subunit protein uL11A / Large ribosomal subunit protein eL19A / Large ribosomal subunit protein uL29A / Large ribosomal subunit protein uL4A / Putative major capsid protein p72 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein eL8A / Large ribosomal subunit protein uL18 / Large ribosomal subunit protein uL13A / Large ribosomal subunit protein eL14A / Large ribosomal subunit protein eL32 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein eL37A / Large ribosomal subunit protein eL38 / Large ribosomal subunit protein eL34A / Large ribosomal subunit protein eL6A / Large ribosomal subunit protein eL21A / LPS-assembly protein LptD / Large ribosomal subunit protein uL5B
類似検索 - 構成要素
生物種Saccharomyces cerevisiae (パン酵母)
手法単粒子再構成法 / クライオ電子顕微鏡法 / 解像度: 3.8 Å
データ登録者Rai J / Parker MD
資金援助 米国, 3件
OrganizationGrant number国
Howard Hughes Medical Institute (HHMI)55108536 米国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)R01-GM117093 米国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)R01-GM086451 米国
引用ジャーナル: RNA / 年: 2021
タイトル: An open interface in the pre-80S ribosome coordinated by ribosome assembly factors Tsr1 and Dim1 enables temporal regulation of Fap7.
著者: Jay Rai / Melissa D Parker / Haina Huang / Stefan Choy / Homa Ghalei / Matthew C Johnson / Katrin Karbstein / M Elizabeth Stroupe /
要旨: During their maturation, nascent 40S subunits enter a translation-like quality control cycle, where they are joined by mature 60S subunits to form 80S-like ribosomes. While these assembly ...During their maturation, nascent 40S subunits enter a translation-like quality control cycle, where they are joined by mature 60S subunits to form 80S-like ribosomes. While these assembly intermediates are essential for maturation and quality control, how they form, and how their structure promotes quality control, remains unknown. To address these questions, we determined the structure of an 80S-like ribosome assembly intermediate to an overall resolution of 3.4 Å. The structure, validated by biochemical data, resolves a large body of previously paradoxical data and illustrates how assembly and translation factors cooperate to promote the formation of an interface that lacks many mature subunit contacts but is stabilized by the universally conserved methyltransferase Dim1. We also show how Tsr1 enables this interface by blocking the canonical binding of eIF5B to 40S subunits, while maintaining its binding to 60S. The structure also shows how this interface leads to unfolding of the platform, which allows for temporal regulation of the ATPase Fap7, thus linking 40S maturation to quality control during ribosome assembly.
履歴
登録2019年4月9日-
ヘッダ(付随情報) 公開2020年3月4日-
マップ公開2020年9月30日-
更新2024年3月20日-
現状2024年3月20日処理サイト: RCSB / 状態: 公開

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構造の表示

ムービー
  • 表面図（断面を密度値に従い着色）
  • 表面レベル: 0.03
  • UCSF Chimeraによる作画
  • ダウンロード
  • 表面図（高さに従い着色）
  • 表面レベル: 0.03
  • UCSF Chimeraによる作画
  • ダウンロード
  • あてはめたモデルとの重ね合わせ
  • 原子モデル: PDB-6oig
  • 表面レベル: 0.03
  • UCSF Chimeraによる作画
  • ダウンロード
ムービービューア
構造ビューアEMマップ:
SurfViewMolmilJmol/JSmol
添付画像

emd_20077.png

ダウンロードとリンク

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マップ

ファイルダウンロード / ファイル: emd_20077.map.gz / 形式: CCP4 / 大きさ: 216 MB / タイプ: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
投影像・断面図

画像のコントロール

大きさ
明度
コントラスト
その他
軸Z (Sec.)Y (Row.)X (Col.)
1.24 Å/pix.
x 384 pix.
= 476.16 Å		1.24 Å/pix.
x 384 pix.
= 476.16 Å		1.24 Å/pix.
x 384 pix.
= 476.16 Å

表面

投影像

断面 (1/3)

断面 (1/2)

断面 (2/3)

画像は Spider により作成

ボクセルのサイズX=Y=Z: 1.24 Å
密度

ヒストグラム

ヒストグラム (対数)
表面レベル登録者による: 0.03 / ムービー #1: 0.03
最小 - 最大-0.07800926 - 0.2322448
平均 (標準偏差)0.0012472362 (±0.01044156)
対称性空間群: 1
詳細

EMDB XML:

マップ形状
Axis orderXYZ
Origin000
サイズ384384384
Spacing384384384
セルA=B=C: 476.16 Å
α=β=γ: 90.0 °

CCP4マップ ヘッダ情報:

modeImage stored as Reals
Å/pix. X/Y/Z1.241.241.24
M x/y/z384384384
origin x/y/z0.0000.0000.000
length x/y/z476.160476.160476.160
α/β/γ90.00090.00090.000
start NX/NY/NZ727265
NX/NY/NZ157157169
MAP C/R/S123
start NC/NR/NS000
NC/NR/NS384384384
D min/max/mean-0.0780.2320.001

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添付データ

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試料の構成要素

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全体 : 60S subunit of 80S-like ribosome

全体名称: 60S subunit of 80S-like ribosome
要素
  • 複合体: 60S subunit of 80S-like ribosome
    • タンパク質・ペプチド: 60S ribosomal protein L1-A
    • タンパク質・ペプチド: 60S ribosomal protein L2-A
    • タンパク質・ペプチド: 60S ribosomal protein L3
    • タンパク質・ペプチド: 60S ribosomal protein L4-A
    • タンパク質・ペプチド: 60S ribosomal protein L5
    • タンパク質・ペプチド: 60S ribosomal protein L6-A
    • タンパク質・ペプチド: 60S ribosomal protein L7-A
    • タンパク質・ペプチド: 60S ribosomal protein L8-A
    • タンパク質・ペプチド: 60S ribosomal protein L9-A
    • タンパク質・ペプチド: 60S ribosomal protein L10
    • タンパク質・ペプチド: 60S ribosomal protein L11-B
    • タンパク質・ペプチド: 60S ribosomal protein L12-A
    • タンパク質・ペプチド: 60S ribosomal protein L13-A
    • タンパク質・ペプチド: 60S ribosomal protein L14-A
    • タンパク質・ペプチド: 60S ribosomal protein L15-A
    • タンパク質・ペプチド: 60S ribosomal protein L16-A
    • タンパク質・ペプチド: 60S ribosomal protein L17-A
    • タンパク質・ペプチド: 60S ribosomal protein L18-A
    • タンパク質・ペプチド: 60S ribosomal protein L19-A
    • タンパク質・ペプチド: 60S ribosomal protein L20-A
    • タンパク質・ペプチド: 60S ribosomal protein L21-A
    • タンパク質・ペプチド: 60S ribosomal protein L22-A
    • タンパク質・ペプチド: 60S ribosomal protein L23-A
    • タンパク質・ペプチド: 60S ribosomal protein L24-A
    • タンパク質・ペプチド: 60S ribosomal protein L25
    • タンパク質・ペプチド: 60S ribosomal protein L26-A
    • タンパク質・ペプチド: 60S ribosomal protein L27-A
    • タンパク質・ペプチド: 60S ribosomal protein L28
    • タンパク質・ペプチド: 60S ribosomal protein L29
    • タンパク質・ペプチド: 60S ribosomal protein L30
    • タンパク質・ペプチド: 60S ribosomal protein L31-A
    • タンパク質・ペプチド: 60S ribosomal protein L32
    • タンパク質・ペプチド: 60S ribosomal protein L33-A
    • タンパク質・ペプチド: 60S ribosomal protein L34-A
    • タンパク質・ペプチド: 60S ribosomal protein L35-A
    • タンパク質・ペプチド: 60S ribosomal protein L36-A
    • タンパク質・ペプチド: 60S ribosomal protein L37-A
    • タンパク質・ペプチド: 60S ribosomal protein L38
    • タンパク質・ペプチド: 60S ribosomal protein L39
    • タンパク質・ペプチド: Ubiquitin-60S ribosomal protein L40
    • タンパク質・ペプチド: 60S ribosomal protein L42-A
    • タンパク質・ペプチド: 60S ribosomal protein L43-A
    • タンパク質・ペプチド: 60S acidic ribosomal protein P0,60S acidic ribosomal protein P0,AO, L1OE
    • RNA: 25S ribosomal RNA
    • RNA: 5.8S ribosomal RNA
    • RNA: 5S ribosomal RNA
    • タンパク質・ペプチド: P1
    • タンパク質・ペプチド: P2

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超分子 #1: 60S subunit of 80S-like ribosome

超分子名称: 60S subunit of 80S-like ribosome / タイプ: complex / ID: 1 / 親要素: 0 / 含まれる分子: #1-#48
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)

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分子 #1: 60S ribosomal protein L1-A

分子名称: 60S ribosomal protein L1-A / タイプ: protein_or_peptide / ID: 1 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 22.974033 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: VKELLKYSNE TKKRNFLETV ELQVGLKNYD PQRDKRFSGS LKLPNCPRPN MSICIFGDAF DVDRAKSCGV DAMSVDDLKK LNKNKKLIK KLSKKYNAFI ASEVLIKQVP RLLGPQLSKA GKFPTPVSHN DDLYGKVTDV RSTIKFQLKK VLCLAVAVGN V EMEEDVLV ...文字列:
VKELLKYSNE TKKRNFLETV ELQVGLKNYD PQRDKRFSGS LKLPNCPRPN MSICIFGDAF DVDRAKSCGV DAMSVDDLKK LNKNKKLIK KLSKKYNAFI ASEVLIKQVP RLLGPQLSKA GKFPTPVSHN DDLYGKVTDV RSTIKFQLKK VLCLAVAVGN V EMEEDVLV NQILMSVNFF VSLLKKNWQN VGSLVVKSSM GPAFRL

UniProtKB: Large ribosomal subunit protein uL1A

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分子 #2: 60S ribosomal protein L2-A

分子名称: 60S ribosomal protein L2-A / タイプ: protein_or_peptide / ID: 2 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 27.217289 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: GRVIRNQRKG AGSIFTSHTR LRQGAAKLRT LDYAERHGYI RGIVKQIVHD SGRGAPLAKV VFRDPYKYRL REEIFIANEG VHTGQFIYA GKKASLNVGN VLPLGSVPEG TIVSNVEEKP GDRGALARAS GNYVIIIGHN PDENKTRVRL PSGAKKVISS D ARGVIGVI ...文字列:
GRVIRNQRKG AGSIFTSHTR LRQGAAKLRT LDYAERHGYI RGIVKQIVHD SGRGAPLAKV VFRDPYKYRL REEIFIANEG VHTGQFIYA GKKASLNVGN VLPLGSVPEG TIVSNVEEKP GDRGALARAS GNYVIIIGHN PDENKTRVRL PSGAKKVISS D ARGVIGVI AGGGRVDKPL LKAGRAFHKY RLKRNSWPKT RGVAMNPVDH PHGGGNHQHI GKASTISRGA VSGQKAGLIA AR RTGLLRG SQKTQ

UniProtKB: Large ribosomal subunit protein uL2A

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分子 #3: 60S ribosomal protein L3

分子名称: 60S ribosomal protein L3 / タイプ: protein_or_peptide / ID: 3 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 43.719602 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: SHRKYEAPRH GHLGFLPRKR AASIRARVKA FPKDDRSKPV ALTSFLGYKA GMTTIVRDLD RPGSKFHKRE VVEAVTVVDT PPVVVVGVV GYVETPRGLR SLTTVWAEHL SDEVKRRFYK NWYKSKKKAF TKYSAKYAQD GAGIERELAR IKKYASVVRV L VHTQIRKT ...文字列:
SHRKYEAPRH GHLGFLPRKR AASIRARVKA FPKDDRSKPV ALTSFLGYKA GMTTIVRDLD RPGSKFHKRE VVEAVTVVDT PPVVVVGVV GYVETPRGLR SLTTVWAEHL SDEVKRRFYK NWYKSKKKAF TKYSAKYAQD GAGIERELAR IKKYASVVRV L VHTQIRKT PLAQKKAHLA EIQLNGGSIS EKVDWAREHF EKTVAVDSVF EQNEMIDAIA VTKGHGFEGV THRWGTKKLP RK THRGLRK VACIGAWHPA HVMWSVARAG QRGYHSRTSI NHKIYRVGKG DDEANGATSF DRTKKTITPM GGFVHYGEIK NDF IMVKGC IPGNRKRIVT LRKSLYTNTS RKALEEVSLK WIDTASKFGK GRFQTPAEKH AFMGTLKKDL

UniProtKB: Large ribosomal subunit protein uL3

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分子 #4: 60S ribosomal protein L4-A

分子名称: 60S ribosomal protein L4-A / タイプ: protein_or_peptide / ID: 4 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 39.027926 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: SRPQVTVHSL TGEATANALP LPAVFSAPIR PDIVHTVFTS VNKNKRQAYA VSEKAGHQTS AESWGTGRAV ARIPRVGGGG TGRSGQGAF GNMCRGGRMF APTKTWRKWN VKVNHNEKRY ATASAIAATA VASLVLARGH RVEKIPEIPL VVSTDLESIQ K TKEAVAAL ...文字列:
SRPQVTVHSL TGEATANALP LPAVFSAPIR PDIVHTVFTS VNKNKRQAYA VSEKAGHQTS AESWGTGRAV ARIPRVGGGG TGRSGQGAF GNMCRGGRMF APTKTWRKWN VKVNHNEKRY ATASAIAATA VASLVLARGH RVEKIPEIPL VVSTDLESIQ K TKEAVAAL KAVGAHSDLL KVLKSKKLRA GKGKYRNRRW TQRRGPLVVY AEDNGIVKAL RNVPGVETAN VASLNLLQLA PG AHLGRFV IWTEAAFTKL DQVWGSETVA SSKVGYTLPS HIISTSDVTR IINSSEIQSA IRPAGQATQK RTHVLKKNPL KNK QVLLRL NPYAKVFAAE KLGSKKAEKT GTKPAAVFTE TLKHD

UniProtKB: Large ribosomal subunit protein uL4A

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分子 #5: 60S ribosomal protein L5

分子名称: 60S ribosomal protein L5 / タイプ: protein_or_peptide / ID: 5 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 33.633633 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: AFQKDAKSSA YSSRFQTPFR RRREGKTDYY QRKRLVTQHK AKYNTPKYRL VVRFTNKDII CQIISSTITG DVVLAAAYSH ELPRYGITH GLTNWAAAYA TGLLIARRTL QKLGLDETYK GVEEVEGEYE LTEAVEDGPR PFKVFLDIGL QRTTTGARVF G ALKGASDG ...文字列:
AFQKDAKSSA YSSRFQTPFR RRREGKTDYY QRKRLVTQHK AKYNTPKYRL VVRFTNKDII CQIISSTITG DVVLAAAYSH ELPRYGITH GLTNWAAAYA TGLLIARRTL QKLGLDETYK GVEEVEGEYE LTEAVEDGPR PFKVFLDIGL QRTTTGARVF G ALKGASDG GLYVPHSENR FPGWDFETEE IDPELLRSYI FGGHVSQYME ELADDDEERF SELFKGYLAD DIDADSLEDI YT SAHEAIR ADPAFKPTEK KFTKEQYAAE SKKYRQTKLS KEERAARVAA KIAALAGQQ

UniProtKB: Large ribosomal subunit protein uL18

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分子 #6: 60S ribosomal protein L6-A

分子名称: 60S ribosomal protein L6-A / タイプ: protein_or_peptide / ID: 6 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 19.869369 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
SAQKAPKWYP SEDVAALKKT RKAARPQKLR ASLVPGTVLI LLAGRFRGKR VVYLKHLEDN TLLISGPFKV NGVPLRRVNA RYVIATSTK VSVEGVNVEK FNVEYFAKEK LTKKEKKEAN LFPEQQNKEI KAERVEDQKV VDKALIAEIK KTPLLKQYLS A SFSLKNGD KPHMLKF

UniProtKB: Large ribosomal subunit protein eL6A

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分子 #7: 60S ribosomal protein L7-A

分子名称: 60S ribosomal protein L7-A / タイプ: protein_or_peptide / ID: 7 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 25.240377 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: AEQVAAERAA RKAANKEKRA IILERNAAYQ KEYETAERNI IQAKRDAKAA GSYYVEAQHK LVFVVRIKGI NKIPPKPRKV LQLLRLTRI NSGTFVKVTK ATLELLKLIE PYVAYGYPSY STIRQLVYKR GFGKINKQRV PLSDNAIIEA NLGKYGILSI D DLIHEIIT ...文字列:
AEQVAAERAA RKAANKEKRA IILERNAAYQ KEYETAERNI IQAKRDAKAA GSYYVEAQHK LVFVVRIKGI NKIPPKPRKV LQLLRLTRI NSGTFVKVTK ATLELLKLIE PYVAYGYPSY STIRQLVYKR GFGKINKQRV PLSDNAIIEA NLGKYGILSI D DLIHEIIT VGPHFKQANN FLWPFKLSNP SGGWGVPRKF KHFIQGGSFG NREEFINKLV KSMN

UniProtKB: Large ribosomal subunit protein uL30A

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分子 #8: 60S ribosomal protein L8-A

分子名称: 60S ribosomal protein L8-A / タイプ: protein_or_peptide / ID: 8 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 25.814998 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: NPLTHSTPKN FGIGQAVQPK RNLSRYVKWP EYVRVQRQKK ILSIRLKVPP TIAQFQYTLD RNTAAETFKL FNKYRPETAA EKKERLTKE AAAVAEGKSK QDASPKPYAV KYGLNHVVAL IENKKAKLVL IANDVDPIEL VVFLPALCKK MGVPYAIVKG K ARLGTLVN ...文字列:
NPLTHSTPKN FGIGQAVQPK RNLSRYVKWP EYVRVQRQKK ILSIRLKVPP TIAQFQYTLD RNTAAETFKL FNKYRPETAA EKKERLTKE AAAVAEGKSK QDASPKPYAV KYGLNHVVAL IENKKAKLVL IANDVDPIEL VVFLPALCKK MGVPYAIVKG K ARLGTLVN QKTSAVAALT EVRAEDEAAL AKLVSTIDAN FADKYDEVKK HWGGGILGNK AQAKMDKRAK NSDSA

UniProtKB: Large ribosomal subunit protein eL8A

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分子 #9: 60S ribosomal protein L9-A

分子名称: 60S ribosomal protein L9-A / タイプ: protein_or_peptide / ID: 9 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 21.605061 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: MKYIQTEQQI EVPEGVTVSI KSRIVKVVGP RGTLTKNLKH IDVTFTKVNN QLIKVAVHNG GRKHVAALRT VKSLVDNMIT GVTKGYKYK MRYVYAHFPI NVNIVEKDGA KFIEVRNFLG DKKIRNVPVR DGVTIEFSTN VKDEIVLSGN SVEDVSQNAA D LQQICRVR ...文字列:
MKYIQTEQQI EVPEGVTVSI KSRIVKVVGP RGTLTKNLKH IDVTFTKVNN QLIKVAVHNG GRKHVAALRT VKSLVDNMIT GVTKGYKYK MRYVYAHFPI NVNIVEKDGA KFIEVRNFLG DKKIRNVPVR DGVTIEFSTN VKDEIVLSGN SVEDVSQNAA D LQQICRVR NKDIRKFLDG IYVSHKGFIT EDL

UniProtKB: Large ribosomal subunit protein uL6A

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分子 #10: 60S ribosomal protein L10

分子名称: 60S ribosomal protein L10 / タイプ: protein_or_peptide / ID: 10 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 25.279271 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: ARRPARCYRY QKNKPYPKSR YNRAVPDSKI RIYDLGKKKA TVDEFPLCVH LVSNELEQLS SEALEAARIC ANKYMTTVSG RDAFHLRVR VHPFHVLRIN KMLSCAGADR LQQGMRGAWG KPHGLAARVD IGQIIFSVRT KDSNKDVVVE GLRRARYKFP G QQKIILSK ...文字列:
ARRPARCYRY QKNKPYPKSR YNRAVPDSKI RIYDLGKKKA TVDEFPLCVH LVSNELEQLS SEALEAARIC ANKYMTTVSG RDAFHLRVR VHPFHVLRIN KMLSCAGADR LQQGMRGAWG KPHGLAARVD IGQIIFSVRT KDSNKDVVVE GLRRARYKFP G QQKIILSK KWGFTNLDRP EYLKKREAGE VKDDGAFVKF LSKKGSLENN IREFPEYFAA QA

UniProtKB: Large ribosomal subunit protein uL16

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分子 #11: 60S ribosomal protein L11-B

分子名称: 60S ribosomal protein L11-B / タイプ: protein_or_peptide / ID: 11 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 19.266082 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
QNPMRDLKIE KLVLNISVGE SGDRLTRASK VLEQLSGQTP VQSKARYTVR TFGIRRNEKI AVHVTVRGPK AEEILERGLK VKEYQLRDR NFSATGNFGF GIDEHIDLGI KYDPSIGIFG MDFYVVMNRP GARVTRRKRC KGTVGNSHKT TKEDTVSWFK Q KYDADVLD K

UniProtKB: Large ribosomal subunit protein uL5B

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分子 #12: 60S ribosomal protein L12-A

分子名称: 60S ribosomal protein L12-A / タイプ: protein_or_peptide / ID: 12 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 16.679318 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
EVKYLYLRAV GGEVGASAAL APKIGPLGLS PKKVGEDIAK ATKEFKGIKV TVQLKIQNRQ AAASVVPSAS SLVITALKEP PRDRKKDKN VKHSGNIQLD EIIEIARQMR DKSFGRTLAS VTKEILGTAQ SVGCRVDFKN PHDIIEGINA GEIEIP

UniProtKB: Large ribosomal subunit protein uL11A

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分子 #13: 60S ribosomal protein L13-A

分子名称: 60S ribosomal protein L13-A / タイプ: protein_or_peptide / ID: 13 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 21.885234 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: AISKNLPILK NHFRKHWQER VKVHFDQAGK KVSRRNARAT RAAKIAPRPL DLLRPVVRAP TVKYNRKVRA GRGFTLAEVK AAGLTAAYA RTIGIAVDHR RQNRNQEIFD ANVQRLKEYQ SKIIVFPRNG KAPEAEQVLS AAATFPIAQP ATDVEARAVQ D NGESAFRT ...文字列:
AISKNLPILK NHFRKHWQER VKVHFDQAGK KVSRRNARAT RAAKIAPRPL DLLRPVVRAP TVKYNRKVRA GRGFTLAEVK AAGLTAAYA RTIGIAVDHR RQNRNQEIFD ANVQRLKEYQ SKIIVFPRNG KAPEAEQVLS AAATFPIAQP ATDVEARAVQ D NGESAFRT LRLARSEKKF RGIREKRARE KAEAE

UniProtKB: LPS-assembly protein LptD

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分子 #14: 60S ribosomal protein L14-A

分子名称: 60S ribosomal protein L14-A / タイプ: protein_or_peptide / ID: 14 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 14.976794 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
TDSIVKASNW RLVEVGRVVL IKKGQSAGKL AAIVEIIDQK KVLIDGPKAG VPRQAINLGQ VVLTPLTFAL PRGARTATVS KKWAAAAVC EKWAASSWAK KIAQRERRAA LTDFERFQVM VLRKQKRYTV KKALAKA

UniProtKB: Large ribosomal subunit protein eL14A

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分子 #15: 60S ribosomal protein L15-A

分子名称: 60S ribosomal protein L15-A / タイプ: protein_or_peptide / ID: 15 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 24.351162 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: GAYKYLEELQ RKKQSDVLRF LQRVRVWEYR QKNVIHRAAR PTRPDKARRL GYKAKQGFVI YRVRVRRGNR KRPVPKGATY GKPTNQGVN ELKYQRSLRA TAEERVGRRA ANLRVLNSYW VNQDSTYKYF EVILVDPQHK AIRRDARYNW ICDPVHKHRE A RGLTATGK ...文字列:
GAYKYLEELQ RKKQSDVLRF LQRVRVWEYR QKNVIHRAAR PTRPDKARRL GYKAKQGFVI YRVRVRRGNR KRPVPKGATY GKPTNQGVN ELKYQRSLRA TAEERVGRRA ANLRVLNSYW VNQDSTYKYF EVILVDPQHK AIRRDARYNW ICDPVHKHRE A RGLTATGK KSRGINKGHK FNNTKAGRRK TWKRQNTLSL WRYRK

UniProtKB: Large ribosomal subunit protein eL15A

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分子 #16: 60S ribosomal protein L16-A

分子名称: 60S ribosomal protein L16-A / タイプ: protein_or_peptide / ID: 16 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 22.028951 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: VEPVVVIDGK GHLVGRLASV VAKQLLNGQK IVVVRAEELN ISGEFFRNKL KYHDFLRKAT AFNKTRGPFH FRAPSRIFYK ALRGMVSHK TARGKAALER LKVFEGIPPP YDKKKRVVVP QALRVLRLKP GRKYTTLGKL STSVGWKYED VVAKLEAKRK V SSAEYYAK ...文字列:
VEPVVVIDGK GHLVGRLASV VAKQLLNGQK IVVVRAEELN ISGEFFRNKL KYHDFLRKAT AFNKTRGPFH FRAPSRIFYK ALRGMVSHK TARGKAALER LKVFEGIPPP YDKKKRVVVP QALRVLRLKP GRKYTTLGKL STSVGWKYED VVAKLEAKRK V SSAEYYAK KRAFTKKVAS ANATAAESDV AKQLAALGY

UniProtKB: Large ribosomal subunit protein uL13A

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分子 #17: 60S ribosomal protein L17-A

分子名称: 60S ribosomal protein L17-A / タイプ: protein_or_peptide / ID: 17 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 20.458322 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
ARYGATSTNP AKSASARGSY LRVSFKNTRE TAQAINGWEL TKAQKYLEQV LDHQRAIPFR RFNSSIGRTA QGKEFGVTKA RWPAKSVKF VQGLLQNAAA NAEAKGLDAT KLYVSHIQVN QAPKQRRRTY RAHGRINKYE SSPSHIELVV TEKEEAVAKA A EKKVVRLT SRQRGRIAAQ KRIAA

UniProtKB: Large ribosomal subunit protein uL22A

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分子 #18: 60S ribosomal protein L18-A

分子名称: 60S ribosomal protein L18-A / タイプ: protein_or_peptide / ID: 18 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 20.478059 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
GIDHTSKQHK RSGHRTAPKS DNVYLKLLVK LYTFLARRTD APFNKVVLKA LFLSKINRPP VSVSRIARAL KQEGAANKTV VVVGTVTDD ARIFEFPKTT VAALRFTAGA RAKIVKAGGE CITLDQLAVR APKGQNTLIL RGPRNSREAV RHFGMGPHKG K APRILSTG RKFERARGRR RSKGFKV

UniProtKB: Large ribosomal subunit protein eL18A

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分子 #19: 60S ribosomal protein L19-A

分子名称: 60S ribosomal protein L19-A / タイプ: protein_or_peptide / ID: 19 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 21.631121 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
ANLRTQKRLA ASVVGVGKRK VWLDPNETSE IAQANSRNAI RKLVKNGTIV KKAVTVHSKS RTRAHAQSKR EGRHSGYGKR KGTREARLP SQVVWIRRLR VLRRLLAKYR DAGKIDKHLY HVLYKESKGN AFKHKRALVE HIIQAKADAQ REKALNEEAE A RRLKNRAA RDRRAQRVAE KRDALLKEDA

UniProtKB: Large ribosomal subunit protein eL19A

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分子 #20: 60S ribosomal protein L20-A

分子名称: 60S ribosomal protein L20-A / タイプ: protein_or_peptide / ID: 20 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 20.478852 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
MAHFKEYQVI GRRLPTESVP EPKLFRMRIF ASNEVIAKSR YWYFLQKLHK VKKASGEIVS INQINEAHPT KVKNFGVWVR YDSRSGTHN MYKEIRDVSR VAAVETLYQD MAARHRARFR SIHILKVAEI EKTADVKRQY VKQFLTKDLK FPLPHRVQKS T KTFSYKRP STFY

UniProtKB: Large ribosomal subunit protein eL20A

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分子 #21: 60S ribosomal protein L21-A

分子名称: 60S ribosomal protein L21-A / タイプ: protein_or_peptide / ID: 21 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 18.148066 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
GKSHGYRSRT RYMFQRDFRK HGAVHLSTYL KVYKVGDIVD IKANGSIQKG MPHKFYQGKT GVVYNVTKSS VGVIINKMVG NRYLEKRLN LRVEHIKHSK CRQEFLERVK ANAAKRAEAK AQGVAVQLKR QPAQPRESRI VSTEGNVPQT LAPVPYETFI

UniProtKB: Large ribosomal subunit protein eL21A

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分子 #22: 60S ribosomal protein L22-A

分子名称: 60S ribosomal protein L22-A / タイプ: protein_or_peptide / ID: 22 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 11.263863 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
QKIAKTFTVD VSSPTENGVF DPASYAKYLI DHIKVEGAVG NLGNAVTVTE DGTVVTVVST AKFSGKYLKY LTKKYLKKNQ LRDWIRFVS TKTNEYRLAF Y

UniProtKB: Large ribosomal subunit protein eL22A

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分子 #23: 60S ribosomal protein L23-A

分子名称: 60S ribosomal protein L23-A / タイプ: protein_or_peptide / ID: 23 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 14.362755 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
SGNGAQGTKF RISLGLPVGA IMNCADNSGA RNLYIIAVKG SGSRLNRLPA ASLGDMVMAT VKKGKPELRK KVMPAIVVRQ AKSWRRRDG VFLYFEDNAG VIANPKGEMK GSAITGPVGK ECADLWPRVA SNSGVVV

UniProtKB: Large ribosomal subunit protein uL14A

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分子 #24: 60S ribosomal protein L24-A

分子名称: 60S ribosomal protein L24-A / タイプ: protein_or_peptide / ID: 24 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 15.506229 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
MKVEIDSFSG AKIYPGRGTL FVRGDSKIFR FQNSKSASLF KQRKNPRRIA WTVLFRKHHK KGITEEVAKK RSRKTVKAQR PITGASLDL IKERRSLKPE VRKANREEKL KANKEKKKAE KAARKAEKAK SAGTQS

UniProtKB: Large ribosomal subunit protein eL24A

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分子 #25: 60S ribosomal protein L25

分子名称: 60S ribosomal protein L25 / タイプ: protein_or_peptide / ID: 25 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 13.771176 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
KALKVRTSAT FRLPKTLKLA RAPKYASKAV PHYNRLDSYK VIEQPITSET AMKKVEDGNI LVFQVSMKAN KYQIKKAVKE LYEVDVLKV NTLVRPNGTK KAYVRLTADY DALDIANRIG YI

UniProtKB: Large ribosomal subunit protein uL23

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分子 #26: 60S ribosomal protein L26-A

分子名称: 60S ribosomal protein L26-A / タイプ: protein_or_peptide / ID: 26 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 14.134588 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
AKQSLDVSSD RRKARKAYFT APSSQRRVLL SAPLSKELRA QYGIKALPIR RDDEVLVVRG SKKGQEGKIS SVYRLKFAVQ VDKVTKEKV NGASVPINLH PSKLVITKLH LDKDRKALIQ RKGGKLE

UniProtKB: Large ribosomal subunit protein uL24A

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分子 #27: 60S ribosomal protein L27-A

分子名称: 60S ribosomal protein L27-A / タイプ: protein_or_peptide / ID: 27 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 15.437166 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
AKFLKAGKVA VVVRGRYAGK KVVIVKPHDE GSKSHPFGHA LVAGIERYPL KVTKKHGAKK VAKRTKIKPF IKVVNYNHLL PTRYTLDVE AFKSVVSTET FEQPSQREEA KKVVKKAFEE RHQAGKNQWF FSKLRF

UniProtKB: Large ribosomal subunit protein eL27A

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分子 #28: 60S ribosomal protein L28

分子名称: 60S ribosomal protein L28 / タイプ: protein_or_peptide / ID: 28 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 16.630471 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
PSRFTKTRKH RGHVSAGKGR IGKHRKHPGG RGMAGGQHHH RINMDKYHPG YFGKVGMRYF HKQQAHFWKP VLNLDKLWTL IPEDKRDQY LKSASKETAP VIDTLAAGYG KILGKGRIPN VPVIVKARFV SKLAEEKIRA AGGVVELIA

UniProtKB: Large ribosomal subunit protein uL15

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分子 #29: 60S ribosomal protein L29

分子名称: 60S ribosomal protein L29 / タイプ: protein_or_peptide / ID: 29 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 6.560688 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
AKSKNHTAHN QTRKAHRNGI KKPKTYKYPS LKGVDPKFRR NHKHALHGTA KALAAAKK

UniProtKB: Large ribosomal subunit protein eL29

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分子 #30: 60S ribosomal protein L30

分子名称: 60S ribosomal protein L30 / タイプ: protein_or_peptide / ID: 30 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 10.558344 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
SINQKLALVI KSGKYTLGYK STVKSLRQGK SKLIIIAANT PVLRKSELEY YAMLSKTKVY YFQGGNNELG TAVGKLFRVG VVSILEAGD SDILTTLA

UniProtKB: Putative major capsid protein p72

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分子 #31: 60S ribosomal protein L31-A

分子名称: 60S ribosomal protein L31-A / タイプ: protein_or_peptide / ID: 31 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 12.649754 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
LKDVVTREYT INLHKRLHGV SFKKRAPRAV KEIKKFAKLH MGTDDVRLAP ELNQAIWKRG VKGVEYRLRL RISRKRNEEE DAKNPLFSY VEPVLVASAK GLQTVVVEED

UniProtKB: Large ribosomal subunit protein eL31A

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分子 #32: 60S ribosomal protein L32

分子名称: 60S ribosomal protein L32 / タイプ: protein_or_peptide / ID: 32 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 14.478054 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
ASLPHPKIVK KHTKKFKRHH SDRYHRVAEN WRKQKGIDSV VRRRFRGNIS QPKIGYGSNK KTKFLSPSGH KTFLVANVKD LETLTMHTK TYAAEIAHNI SAKNRVVILA RAKALGIKVT NPKGRLAL

UniProtKB: Large ribosomal subunit protein eL32

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分子 #33: 60S ribosomal protein L33-A

分子名称: 60S ribosomal protein L33-A / タイプ: protein_or_peptide / ID: 33 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 12.045935 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
AESHRLYVKG KHLSYQRSKR VNNPNVSLIK IEGVATPQDA QFYLGKRIAY VYRASKEVRG SKIRVMWGKV TRTHGNSGVV RATFRNNLP AKTFGASVRI FLYPSNI

UniProtKB: Large ribosomal subunit protein eL33A

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分子 #34: 60S ribosomal protein L34-A

分子名称: 60S ribosomal protein L34-A / タイプ: protein_or_peptide / ID: 34 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 12.608831 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
AQRVTFRRRN PYNTRSNKIK VVKTPGGILR AQHVKKLATR PKCGDCGSAL QGISTLRPRQ YATVSKTHKT VSRAYGGSRC ANCVKERII RAFLIEEQKI VKKVVKEQTE AAK

UniProtKB: Large ribosomal subunit protein eL34A

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分子 #35: 60S ribosomal protein L35-A

分子名称: 60S ribosomal protein L35-A / タイプ: protein_or_peptide / ID: 35 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 13.811444 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
AGVKAYELRT KSKEQLASQL VDLKKELAEL KVQKLSRPSL PKIKTVRKSI ACVLTVINEQ QREAVRQLYK GKKYQPKDLR AKKTRALRR ALTKFEASQV TEKQRKKQIA FPQRKYAIKA

UniProtKB: Large ribosomal subunit protein uL29A

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分子 #36: 60S ribosomal protein L36-A

分子名称: 60S ribosomal protein L36-A / タイプ: protein_or_peptide / ID: 36 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 11.020063 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
TVKTGIAIGL NKGKKVTSMT PAPKISYKKG AASNRTKFVR SLVREIAGLS PYERRLIDLI RNSGEKRARK VAKKRLGSFT RAKAKVEEM NNIIAASRRH

UniProtKB: Large ribosomal subunit protein eL36A

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分子 #37: 60S ribosomal protein L37-A

分子名称: 60S ribosomal protein L37-A / タイプ: protein_or_peptide / ID: 37 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 9.746199 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
GKGTPSFGKR HNKSHTLCNR CGRRSFHVQK KTCSSCGYPA AKTRSYNWGA KAKRRHTTGT GRMRYLKHVS RRFKNGFQTG SASKASA

UniProtKB: Large ribosomal subunit protein eL37A

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分子 #38: 60S ribosomal protein L38

分子名称: 60S ribosomal protein L38 / タイプ: protein_or_peptide / ID: 38 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 8.714363 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
AREITDIKQF LELTRRADVK TATVKINKKL NKAGKPFRQT KFKVRGSSSL YTLVINDAGK AKKLIQSLPP TLKVNRL

UniProtKB: Large ribosomal subunit protein eL38

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分子 #39: 60S ribosomal protein L39

分子名称: 60S ribosomal protein L39 / タイプ: protein_or_peptide / ID: 39 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 6.227444 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
AAQKSFRIKQ KMAKAKKQNR PLPQWIRLRT NNTIRYNAKR RNWRRTKMNI

UniProtKB: Large ribosomal subunit protein eL39

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分子 #40: Ubiquitin-60S ribosomal protein L40

分子名称: Ubiquitin-60S ribosomal protein L40 / タイプ: protein_or_peptide / ID: 40 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 6.032321 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
IIEPSLKALA SKYNCDKSVC RKCYARLPPR ATNCRKRKCG HTNQLRPKKK LK

UniProtKB: Ubiquitin-ribosomal protein eL40A fusion protein

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分子 #41: 60S ribosomal protein L42-A

分子名称: 60S ribosomal protein L42-A / タイプ: protein_or_peptide / ID: 41 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 12.115462 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
VNVPKTRKTY CKGKTCRKHT QHKVTQYKAG KASLFAQGKR RYDRKQSGFG GQTKPVFHKK AKTTKKVVLR LECVKCKTRA QLTLKRCKH FELGGEKKQK GQALQF

UniProtKB: Large ribosomal subunit protein eL42A

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分子 #42: 60S ribosomal protein L43-A

分子名称: 60S ribosomal protein L43-A / タイプ: protein_or_peptide / ID: 42 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 9.981756 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列:
AKRTKKVGIT GKYGVRYGSS LRRQVKKLEI QQHARYDCSF CGKKTVKRGA AGIWTCSCCK KTVAGGAYTV STAAAATVRS TIRRLREMV EA

UniProtKB: Large ribosomal subunit protein eL43A

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分子 #43: 60S acidic ribosomal protein P0,60S acidic ribosomal protein P0,A...

分子名称: 60S acidic ribosomal protein P0,60S acidic ribosomal protein P0,AO, L1OE
タイプ: protein_or_peptide / ID: 43 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 23.585346 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: GIREKKAEYF AKLREYLEEY KSLFVVGVDN VSSQQMHEVR KELRGRAVVL MGKNTMVRRA IRGFLSDLPD FEKLLPFVKG NVGFVFTNE PLTEIKNVIV SNRVAAPARA GAVAPEDIWV RAVNTGMEPG KTSFFQALGV PTKIARGTIE IVSDVKVVDA G NKVGQSEA ...文字列:
GIREKKAEYF AKLREYLEEY KSLFVVGVDN VSSQQMHEVR KELRGRAVVL MGKNTMVRRA IRGFLSDLPD FEKLLPFVKG NVGFVFTNE PLTEIKNVIV SNRVAAPARA GAVAPEDIWV RAVNTGMEPG KTSFFQALGV PTKIARGTIE IVSDVKVVDA G NKVGQSEA SLLNLLNISP FTFGLTVVQV YDNGQVFP(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)

UniProtKB: Large ribosomal subunit protein uL10

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分子 #47: P1

分子名称: P1 / タイプ: protein_or_peptide / ID: 47 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 4.017944 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK) ...文字列:
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)

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分子 #48: P2

分子名称: P2 / タイプ: protein_or_peptide / ID: 48 / コピー数: 1 / 光学異性体: LEVO
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 3.932839 KDa
組換発現生物種: Saccharomyces cerevisiae (パン酵母)
配列文字列: (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK) ...文字列:
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)

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分子 #44: 25S ribosomal RNA

分子名称: 25S ribosomal RNA / タイプ: rna / ID: 44 / コピー数: 1
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 1.096842375 MDa
配列文字列: UUGACCUCAA AUCAGGUAGG AGUACCCGCU GAACUUAAGC AUAUCAAUAA GCGGAGGAAA AGAAACCAAC CGGGAUUGCC UUAGUAACG GCGAGUGAAG CGGCAAAAGC UCAAAUUUGA AAUCUGGUAC CUUCGGUGCC CGAGUUGUAA UUUGGAGAGG G CAACUUUG ...文字列:
UUGACCUCAA AUCAGGUAGG AGUACCCGCU GAACUUAAGC AUAUCAAUAA GCGGAGGAAA AGAAACCAAC CGGGAUUGCC UUAGUAACG GCGAGUGAAG CGGCAAAAGC UCAAAUUUGA AAUCUGGUAC CUUCGGUGCC CGAGUUGUAA UUUGGAGAGG G CAACUUUG GGGCCGUUCC UUGUCUAUGU UCCUUGGAAC AGGACGUCAU AGAGGGUGAG AAUCCCGUGU GGCGAGGAGU GC GGUUCUU UGUAAAGUGC CUUCGAAGAG UCGAGUUGUU UGGGAAUGCA GCUCUAAGUG GGUGGUAAAU UCCAUCUAAA GCU AAAUAU UGGCGAGAGA CCGAUAGCGA ACAAGUACAG UGAUGGAAAG AUGAAAAGAA CUUUGAAAAG AGAGUGAAAA AGUA CGUGA AAUUGUUGAA AGGGAAGGGC AUUUGAUCAG ACAUGGUGUU UUGUGCCCUC UGCUCCUUGU GGGUAGGGGA AUCUC GCAU UUCACUGGGC CAGCAUCAGU UUUGGUGGCA GGAUAAAUCC AUAGGAAUGU AGCUUGCCUC GGUAAGUAUU AUAGCC UGU GGGAAUACUG CCAGCUGGGA CUGAGGACUG CGACGUAAGU CAAGGAUGCU GGCAUAAUGG UUAUAUGCCG CCCGUCU UG AAACACGGAC CAAGGAGUCU AACGUCUAUG CGAGUGUUUG GGUGUAAAAC CCAUACGCGU AAUGAAAGUG AACGUAGG U UGGGGCCUCG CAAGAGGUGC ACAAUCGACC GAUCCUGAUG UCUUCGGAUG GAUUUGAGUA AGAGCAUAGC UGUUGGGAC CCGAAAGAUG GUGAACUAUG CCUGAAUAGG GUGAAGCCAG AGGAAACUCU GGUGGAGGCU CGUAGCGGUU CUGACGUGCA AAUCGAUCG UCGAAUUUGG GUAUAGGGGC GAAAGACUAA UCGAACCAUC UAGUAGCUGG UUCCUGCCGA AGUUUCCCUC A GGAUAGCA GAAGCUCGUA UCAGUUUUAU GAGGUAAAGC GAAUGAUUAG AGGUUCCGGG GUCGAAAUGA CCUUGACCUA UU CUCAAAC UUUAAAUAUG UAAGAAGUCC UUGUUACUUA AUUGAACGUG GACAUUUGAA UGAAGAGCUU UUAGUGGGCC AUU UUUGGU AAGCAGAACU GGCGAUGCGG GAUGAACCGA ACGUAGAGUU AAGGUGCCGG AAUACACGCU CAUCAGACAC CACA AAAGG UGUUAGUUCA UCUAGACAGC CGGACGGUGG CCAUGGAAGU CGGAAUCCGC UAAGGAGUGU GUAACAACUC ACCGG CCGA AUGAACUAGC CCUGAAAAUG GAUGGCGCUC AAGCGUGUUA CCUAUACUCU ACCGUCAGGG UUGAUAUGAU GCCCUG ACG AGUAGGCAGG CGUGGAGGUC AGUGACGAAG CCUAGACCGU AAGGUCGGGU CGAACGGCCU CUAGUGCAGA UCUUGGU GG UAGUAGCAAA UAUUCAAAUG AGAACUUUGA AGACUGAAGU GGGGAAAGGU UCCACGUCAA CAGCAGUUGG ACGUGGGU U AGUCGAUCCU AAGAGAUGGG GAAGCUCCGU UUCAAAGGCC UGAUUUUAUG CAGGCCACCA UCGAAAGGGA AUCCGGUUA AGAUUCCGGA ACCUGGAUAU GGAUUCUUCA CGGUAACGUA ACUGAAUGUG GAGACGUCGG CGCGAGCCCU GGGAGGAGUU AUCUUUUCU UCUUAACAGC UUAUCACCCC GGAAUUGGUU UAUCCGGAGA UGGGGUCUUA UGGCUGGAAG AGGCCAGCAC C UUUGCUGG CUCCGGUGCG CUUGUGACGG CCCGUGAAAA UCCACAGGAA GGAAUAGUUU UCAUGCCAGG UCGUACUGAU AA CCGCAGC AGGUCUCCAA GGUGAACAGC CUCUAGUUGA UAGAAUAAUG UAGAUAAGGG AAGUCGGCAA AAUAGAUCCG UAA CUUCGG GAUAAGGAUU GGCUCUAAGG GUCGGGUAGU GAGGGCCUUG GUCAGACGCA GCGGGCGUGC UUGUGGACUG CUUG GUGGG GCUUGCUCUG CUAGGCGGAC UACUUGCGUG CCUUGUUGUA GACGGCCUUG GUAGGUCUCU UGUAGACCGU CGCUU GCUA CAAUUAACGA UCAACUUAGA ACUGGUACGG ACAAGGGGAA UCUGACUGUC UAAUUAAAAC AUAGCAUUGC GAUGGU CAG AAAGUGAUGU UGACGCAAUG UGAUUUCUGC CCAGUGCUCU GAAUGUCAAA GUGAAGAAAU UCAACCAAGC GCGGGUA AA CGGCGGGAGU AACUAUGACU CUCUUAAGGU AGCCAAAUGC CUCGUCAUCU AAUUAGUGAC GCGCAUGAAU GGAUUAAC G AGAUUCCCAC UGUCCCUAUC UACUAUCUAG CGAAACCACA GCCAAGGGAA CGGGCUUGGC AGAAUCAGCG GGGAAAGAA GACCCUGUUG AGCUUGACUC UAGUUUGACA UUGUGAAGAG ACAUAGAGGG UGUAGAAUAA GUGGGAGCUU CGGCGCCAGU GAAAUACCA CUACCUUUAU AGUUUCUUUA CUUAUUCAAU GAAGCGGAGC UGGAAUUCAU UUUCCACGUU CUAGCAUUCA A GGUCCCAU UCGGGGCUGA UCCGGGUUGA AGACAUUGUC AGGUGGGGAG UUUGGCUGGG GCGGCACAUC UGUUAAACGA UA ACGCAGA UGUCCUAAGG GGGGCUCAUG GAGAACAGAA AUCUCCAGUA GAACAAAAGG GUAAAAGCCC CCUUGAUUUU GAU UUUCAG UGUGAAUACA AACCAUGAAA GUGUGGCCUA UCGAUCCUUU AGUCCCUCGG AAUUUGAGGC UAGAGGUGCC AGAA AAGUU ACCACAGGGA UAACUGGCUU GUGGCAGUCA AGCGUUCAUA GCGACAUUGC UUUUUGAUUC UUCGAUGUCG GCUCU UCCU AUCAUACCGA AGCAGAAUUC GGUAAGCGUU GGAUUGUUCA CCCACUAAUA GGGAACGUGA GCUGGGUUUA GACCGU CGU GAGACAGGUU AGUUUUACCC UACUGAUGAA UGUUACCGCA AUAGUAAUUG AACUUAGUAC GAGAGGAACA GUUCAUU CG GAUAAUUGGU UUUUGCGGCU GUCUGAUCAG GCAUUGCCGC GAAGCUACCA UCCGCUGGAU UAUGGCUGAA CGCCUCUA A GUCAGAAUCC AUGCUAGAAC GCGGUGAUUU CUUUGCUCCA CACAAUAUAG AUGGAUACGA AUAAGGCGUC CUUGUGGCG UCGCUGAACC AUAGCAGGCU AGCAACGGUG CACUUGGCGG AAAGGCCUUG GGUGCUUGCU GGCGAAUUGC AAUGUCAUUU UGCGUGGGG AUAAAUCAUU UGUAUACGAC UUAGAUGUAC AACGGGGUAU UGUAAGCAGU AGAGUAGCCU UGUUGUUACG A UCUGCUGA GAUUAAGCCU UUGUUGUCUG AUUUGU

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分子 #45: 5.8S ribosomal RNA

分子名称: 5.8S ribosomal RNA / タイプ: rna / ID: 45 / コピー数: 1
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 50.682922 KDa
配列文字列:
AAACUUUCAA CAACGGAUCU CUUGGUUCUC GCAUCGAUGA AGAACGCAGC GAAAUGCGAU ACGUAAUGUG AAUUGCAGAA UUCCGUGAA UCAUCGAAUC UUUGAACGCA CAUUGCGCCC CUUGGUAUUC CAGGGGGCAU GCCUGUUUGA GCGUCAUUU

GENBANK: GENBANK: MG214542.1

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分子 #46: 5S ribosomal RNA

分子名称: 5S ribosomal RNA / タイプ: rna / ID: 46 / コピー数: 1
由来(天然)生物種: Saccharomyces cerevisiae (パン酵母)
分子量理論値: 38.951105 KDa
配列文字列:
GGUUGCGGCC AUAUCUACCA GAAAGCACCG UUUCCCGUCC GAUCAACUGU AGUUAAGCUG GUAAGAGCCU GACCGAGUAG UGUAGUGGG UGACCAUACG CGAAACUCAG GUGCUGCAAU CU

GENBANK: GENBANK: CP008434.1

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実験情報

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構造解析

手法クライオ電子顕微鏡法
解析単粒子再構成法
試料の集合状態particle

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試料調製

緩衝液pH: 6.8
グリッド詳細: unspecified
凍結凍結剤: ETHANE

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電子顕微鏡法

顕微鏡FEI TITAN KRIOS
撮影フィルム・検出器のモデル: DIRECT ELECTRON DE-64 (8k x 8k)
検出モード: COUNTING / 平均電子線量: 25.0 e/Å2
電子線加速電圧: 300 kV / 電子線源: FIELD EMISSION GUN
電子光学系照射モード: FLOOD BEAM / 撮影モード: BRIGHT FIELD
実験機器
モデル: Titan Krios / 画像提供: FEI Company

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画像解析

初期モデルモデルのタイプ: EMDB MAP
最終 再構成解像度のタイプ: BY AUTHOR / 解像度: 3.8 Å / 解像度の算出法: FSC 0.143 CUT-OFF / 使用した粒子像数: 83558
初期 角度割当タイプ: NOT APPLICABLE
最終 角度割当タイプ: MAXIMUM LIKELIHOOD

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る