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- EMDB-10004: Native encapsulated dye decolourising type peroxidase from Mycoba... -
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Open data
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Basic information
Entry | Database: EMDB / ID: EMD-10004 | |||||||||
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Title | Native encapsulated dye decolourising type peroxidase from Mycobacterium smegmatis | |||||||||
![]() | Encapsulated dye decolourising type peroxidase | |||||||||
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Biological species | ![]() | |||||||||
Method | single particle reconstruction / negative staining / Resolution: 25.0 Å | |||||||||
![]() | Kirykowicz AM / Woodward JD | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structural pipeline for the investigation of Mycobacterial protein complexes involved in the stationary phase stress response Authors: Kirykowicz AM / Woodward JD | |||||||||
History |
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Structure visualization
Movie |
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Structure viewer | EM map: ![]() ![]() ![]() |
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 156.9 KB | ![]() | |
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Header (meta data) | ![]() ![]() | 9.4 KB 9.4 KB | Display Display | ![]() |
Images | ![]() | 21.8 KB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 186.7 KB | Display | ![]() |
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Full document | ![]() | 185.8 KB | Display | |
Data in XML | ![]() | 5.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | C: citing same article ( |
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Similar structure data |
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Annotation | Encapsulated dye decolourising type peroxidase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 3.84 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
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Sample components
-Entire : Encapsulated DyP type peroxidase
Entire | Name: Encapsulated DyP type peroxidase |
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Components |
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-Supramolecule #1: Encapsulated DyP type peroxidase
Supramolecule | Name: Encapsulated DyP type peroxidase / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1 / Details: Mask applied to encapsulin shell |
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Source (natural) | Organism: ![]() |
Molecular weight | Experimental: 222 KDa |
-Experimental details
-Structure determination
Method | negative staining |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Concentration | 0.3 mg/mL |
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Buffer | pH: 8 / Details: 200 mM NaCl, 50 mM Tris-HCl |
Staining | Type: NEGATIVE / Material: Uranyl acetate / Details: Sample washed/blotted with 2% UA and air-dried |
Details | Negative stain |
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Electron microscopy
Microscope | FEI TECNAI F20 |
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Image recording | Film or detector model: GATAN ULTRASCAN 4000 (4k x 4k) / Digitization - Dimensions - Width: 4000 pixel / Digitization - Dimensions - Height: 4000 pixel / Average exposure time: 0.5 sec. / Average electron dose: 20.0 e/Å2 |
Electron beam | Acceleration voltage: 200 kV / Electron source: ![]() |
Electron optics | C2 aperture diameter: 70.0 µm / Illumination mode: OTHER / Imaging mode: OTHER / Cs: 1.2 mm / Nominal magnification: 50000 |
Experimental equipment | ![]() Model: Tecnai F20 / Image courtesy: FEI Company |