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Yorodumi- SASDGZ3: Subgenomic flavivirus RNAs from Zika virus (Subgenomic flavivirus... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDGZ3 |
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Sample | Subgenomic flavivirus RNAs from Zika virus
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Biological species | Zika virus |
Citation | Date: 2019 Sep 10 Title: Long non‐coding subgenomic flavivirus RNAs have extended 3D structures and are flexible in solution Authors: Zhang Y / Zhang Y / Liu Z / Cheng M / Ma J / Wang Y / Qin C |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDGZ3 |
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-Related structure data
Related structure data | C: citing same article (ref.) |
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Similar structure data |
-Models
Model #3584 | Type: dummy / Software: (2.8.3) / Radius of dummy atoms: 6.75 A / Symmetry: P1 / Chi-square value: 0.333 / P-value: 0.129727 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #3609 | Type: atomic / Chi-square value: 0.606 Search similar-shape structures of this assembly by Omokage search (details) |
Model #3610 | Type: atomic / Chi-square value: 0.606 Search similar-shape structures of this assembly by Omokage search (details) |
Model #3611 | Type: atomic / Chi-square value: 0.606 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: Subgenomic flavivirus RNAs from Zika virus / Specimen concentration: 0.75-3.00 |
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Buffer | Name: 20mM Tris-HCl, 100mM NaCl, 5mM MgCl2 / pH: 7.5 |
Entity #1836 | Name: ZIKV-sfRNA / Type: RNA / Description: Subgenomic flavivirus RNA from Zika virus / Formula weight: 133.491 / Num. of mol.: 1 / Source: Zika virus Sequence: UGUCAGGCCU GCUAGUCAGC CACAGCUUGG GGAAAGCUGU GCAGCCUGUG ACCCCCCCAG GAGAAGCUGG GAAACCAAGC CCAUAGUCAG GCCGAGAACG CCAUGGCACG GAAGAAGCCA UGCUGCCUGU GAGCCCCUCA GAGGACACUG AGUCAAAAAA CCCCACGCGC ...Sequence: UGUCAGGCCU GCUAGUCAGC CACAGCUUGG GGAAAGCUGU GCAGCCUGUG ACCCCCCCAG GAGAAGCUGG GAAACCAAGC CCAUAGUCAG GCCGAGAACG CCAUGGCACG GAAGAAGCCA UGCUGCCUGU GAGCCCCUCA GAGGACACUG AGUCAAAAAA CCCCACGCGC UUGGAGGCGC AGGAUGGGAA AAGAAGGUGG CGACCUUCCC CACCCUUUAA UCUGGGGCCU GAACUGGAGA UCAGCUGUGG AUCUCCAGAA GAGGGACUAG UGGUUAGAGG AGACCCCCCG GAAAACGCAA AACAGCAUAU UGACGCUGGG AAAGACCAGA GACUCCAUGA GUUUCCACCA CGCUGGCCGC CAGGCACAGA UCGCCGAAUA GCGGCGGCCG GUGUGGGGAA AUCCAUGGGU CU |
-Experimental information
Beam | Instrument name: Advanced Photon Source (APS), Argonne National Laboratory 12ID-B SAXS/WAXS City: Lemont, IL / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.08857 Å / Dist. spec. to detc.: 2 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 2M | ||||||||||||||||||||||||||||||
Scan | Title: Subgenomic flavivirus RNAs from Zika virus / Measurement date: Mar 13, 2017 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 1 sec. / Number of frames: 30 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 4.6 / Number of points: 149 /
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Result | Type of curve: extrapolated Comments: The subtracted SAXS data series used to generate the final extrapolated to zero-concentration profile displayed in this entry are provided in the full entry zip archive. The ab initio dummy ...Comments: The subtracted SAXS data series used to generate the final extrapolated to zero-concentration profile displayed in this entry are provided in the full entry zip archive. The ab initio dummy atom model represents the averaged spatial disposition of the RNA in solution (DAMFILT model), derived from several aligned individual models (corresponding fit).
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