+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDG24 |
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Sample | Subgenomic flavivirus RNAs from Dengue virus 2
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Biological species | Dengue virus 2 |
Citation | Date: 2019 Sep 10 Title: Long non‐coding subgenomic flavivirus RNAs have extended 3D structures and are flexible in solution Authors: Zhang Y / Zhang Y / Liu Z / Cheng M / Ma J / Wang Y / Qin C |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDG24 |
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-Related structure data
Related structure data | C: citing same article (ref.) |
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Similar structure data |
-Models
Model #3585 | Type: dummy / Software: (2.8.3) / Radius of dummy atoms: 7.00 A / Chi-square value: 0.530 / P-value: 0.129727 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #3606 | Type: atomic / Chi-square value: 0.350 / P-value: 0.000060 Search similar-shape structures of this assembly by Omokage search (details) |
Model #3607 | Type: atomic / Chi-square value: 0.350 / P-value: 0.000060 Search similar-shape structures of this assembly by Omokage search (details) |
Model #3608 | Type: atomic / Chi-square value: 0.350 / P-value: 0.000060 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: Subgenomic flavivirus RNAs from Dengue virus 2 / Specimen concentration: 0.75-3.00 |
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Buffer | Name: 20mM Tris-HCl, 100mM NaCl, 5mM MgCl2 / pH: 7.5 |
Entity #1837 | Name: DENV2-sfRNA / Type: RNA / Description: Subgenomic flavivirus RNAs from Dengue virus 2 / Formula weight: 136.889 / Num. of mol.: 1 / Source: Dengue virus 2 Sequence: GGAGUCAGGU CGGAUUAAGC CAUAGUACGG AAAAAACUAU GCUACCUGUG AGCCCCGUCC AAGGACGUUA AAAGAAGUCA GGCCAUUACA AAUGCCAUAG CUUGAGUAAA CUGUGCAGCC UGUAGCUCCA CCUGAGAAGG UGUAAAAAAU CUGGGAGGCC ACAAACCAUG ...Sequence: GGAGUCAGGU CGGAUUAAGC CAUAGUACGG AAAAAACUAU GCUACCUGUG AGCCCCGUCC AAGGACGUUA AAAGAAGUCA GGCCAUUACA AAUGCCAUAG CUUGAGUAAA CUGUGCAGCC UGUAGCUCCA CCUGAGAAGG UGUAAAAAAU CUGGGAGGCC ACAAACCAUG GAAGCUGUAC GCAUGGCGUA GUGGACUAGC GGUUAGAGGA GACCCCUCCC UUACAAAUCG CAGCAACAAU GGGGGCCCAA GGUGAGAUGA AGCUGUAGUC UCACUGGAAG GACUAGAGGU UAGAGGAGAC CCCCCCAAAA CAAAAAACAG CAUAUUGACG CUGGGAAAGA CCAGAGAUCC UGCUGUCUCC UCAGCAUCAU UCCAGGCACA GAACGCCAGA AAAUGGAAUG GUGCUGUUGA AUCAACAGGU UCU |
-Experimental information
Beam | Instrument name: Advanced Photon Source (APS), Argonne National Laboratory 12ID-B SAXS/WAXS City: Lemont, IL / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.08857 Å / Dist. spec. to detc.: 2 mm | |||||||||||||||||||||||||||
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Detector | Name: Pilatus 2M | |||||||||||||||||||||||||||
Scan | Title: Subgenomic flavivirus RNAs from Dengue virus 2 / Measurement date: Dec 16, 2016 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 1 sec. / Number of frames: 30 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 4.6 / Number of points: 149 /
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Result | Type of curve: extrapolated Comments: The subtracted SAXS data series used to generate the final extrapolated to zero-concentration profile displayed in this entry are provided in the full entry zip archive. The ab initio dummy ...Comments: The subtracted SAXS data series used to generate the final extrapolated to zero-concentration profile displayed in this entry are provided in the full entry zip archive. The ab initio dummy atom model represents the averaged spatial disposition of the RNA in solution (DAMFILT model), derived from several aligned individual models (corresponding fit).
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