[English] 日本語
Yorodumi- SASDDQ9: N-terminal half of herpes simplex virus type-1 inner tegument pro... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDDQ9 |
---|---|
Sample | N-terminal half of herpes simplex virus type-1 inner tegument protein UL37
|
Function / homology | Function and homology information microtubule-dependent intracellular transport of viral material towards cell periphery / protein-glutamine glutaminase activity / protein-glutamine glutaminase / symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway / viral tegument / Hydrolases; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides / virion assembly / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity / host cell / host cell Golgi apparatus ...microtubule-dependent intracellular transport of viral material towards cell periphery / protein-glutamine glutaminase activity / protein-glutamine glutaminase / symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway / viral tegument / Hydrolases; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides / virion assembly / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity / host cell / host cell Golgi apparatus / host cell cytoplasm / virus-mediated perturbation of host defense response / host cell nucleus / identical protein binding Similarity search - Function |
Biological species | Human herpesvirus 1 (strain 17) |
Citation | Date: 2018 Aug 30 Title: The dynamic nature of the conserved tegument protein UL37 of herpesviruses. Authors: "Koenigsberg A", "Heldwein E" |
Contact author |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Data source
SASBDB page | SASDDQ9 |
---|
-Related structure data
Related structure data | C: citing same article (ref.) |
---|---|
Similar structure data |
-External links
Related items in Molecule of the Month |
---|
-Models
Model #2175 | Type: dummy / Software: (5.0) / Radius of dummy atoms: 2.75 A / Symmetry: P1, none / Chi-square value: 1.145 / P-value: 0.108692 Search similar-shape structures of this assembly by Omokage search (details) |
---|---|
Model #2176 | Type: dummy / Radius of dummy atoms: 2.80 A / Symmetry: P1, none / Chi-square value: 1.145 / P-value: 0.108692 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: N-terminal half of herpes simplex virus type-1 inner tegument protein UL37 Specimen concentration: 6 mg/ml |
---|---|
Buffer | Name: 100 mM HEPES 150 mM NaCl 5% glycerol 0.1 mM tris(2-carboxyethyl)phosphine (TCEP) pH: 7.5 |
Entity #1189 | Name: HSV1 UL37 / Type: protein / Description: Inner tegument protein / Formula weight: 61.724 / Num. of mol.: 1 / Source: Human herpesvirus 1 (strain 17) / References: UniProt: P10221 Sequence: GPGSMADRGP PSEAPVVTTS PAGPPSDGPM QRLLASLAGL RQPPTPTAET ANGADDPAFL ATAKLRAAMA AFLLSGTAIA PADARDCWRP LLEHLCALHR AHGLPETALL AENLPGLLVH RLVVALPEAP DQAFREMEVI KDTILAVTGS DTSHALDSAG LRTAAALGPV ...Sequence: GPGSMADRGP PSEAPVVTTS PAGPPSDGPM QRLLASLAGL RQPPTPTAET ANGADDPAFL ATAKLRAAMA AFLLSGTAIA PADARDCWRP LLEHLCALHR AHGLPETALL AENLPGLLVH RLVVALPEAP DQAFREMEVI KDTILAVTGS DTSHALDSAG LRTAAALGPV RVRQCAVEWI DRWQTVTKSC LAMSPRTSIE ALGETSLKMA PVPLGQPSAN LTTPAYSLLF PAPFVQEGLR FLALVSNRVT LFSAHLQRID DATLTPLTRA LFTLALVDEY LTTPERGAVV PPPLLAQFQH TVREIDPAIM IPPLEANKMV RSREEVRVST ALSRVSPRSA CAPPGTLMAR VRTDVAVFDP DVPFLSSSAL AVFQPAVSSL LQLGEQPSAG AQQRLLALLQ QTWTLIQNTN SPSVVINTLI DAGFTPSHCT HYLSALEGFL AAGVPARTPT GHGLGEVQQL FGCIALAGSN VFGLAREYGY YANYVKTFRR VQGASEHTHG RLCEAVGLSG GVLSQTLARI MGPAVPTEHL ASLRRALVGE FETAERRFSS GQPSLLRETA LIWIDVYGQT HWDITPTTP |
-Experimental information
Beam | Instrument name: Cornell High Energy Synchrotron Source (CHESS) G1 City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.124662 Å / Dist. spec. to detc.: 1.53109 mm | ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Detector | Name: Pilatus 200K / Type: Pilatus / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||
Scan | Title: N-terminal half of herpes simplex virus type-1 inner tegument protein UL37 Measurement date: Jun 3, 2017 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 2 sec. / Number of frames: 300 / Unit: 1/A /
| ||||||||||||||||||||||||||||||
Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 480 /
| ||||||||||||||||||||||||||||||
Result | Type of curve: sec Comments: Additional SEC parameters: Column type: Superdex 200 Increase 5/150 GE; Flow rate: 0.3 mL/min; Sample injection concentration: 6 mg/ml; Injection volume: 100 µl.
|