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- SASDD95: Neurexin 1a L5L6 (L5L6) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDD95
SampleNeurexin 1a L5L6
  • Neurexin 1a L5L6 (protein), L5L6
Function / homology
Function and homology information


gephyrin clustering involved in postsynaptic density assembly / neuroligin clustering involved in postsynaptic membrane assembly / postsynaptic density protein 95 clustering / postsynaptic membrane assembly / vocal learning / positive regulation of synapse maturation / neuroligin family protein binding / neuron cell-cell adhesion / vocalization behavior / neurotransmitter secretion ...gephyrin clustering involved in postsynaptic density assembly / neuroligin clustering involved in postsynaptic membrane assembly / postsynaptic density protein 95 clustering / postsynaptic membrane assembly / vocal learning / positive regulation of synapse maturation / neuroligin family protein binding / neuron cell-cell adhesion / vocalization behavior / neurotransmitter secretion / acetylcholine receptor binding / Neurexins and neuroligins / positive regulation of synapse assembly / adult behavior / social behavior / calcium channel regulator activity / positive regulation of excitatory postsynaptic potential / neuromuscular process controlling balance / Non-integrin membrane-ECM interactions / synapse assembly / cell adhesion molecule binding / positive regulation of synaptic transmission, glutamatergic / learning / cell projection / axon guidance / signaling receptor activity / presynaptic membrane / chemical synaptic transmission / nuclear membrane / vesicle / neuronal cell body / calcium ion binding / nucleolus / cell surface / endoplasmic reticulum / plasma membrane
Similarity search - Function
Syndecan/Neurexin domain / Syndecan domain / Neurexin/syndecan/glycophorin C / putative band 4.1 homologues' binding motif / Laminin G domain / Laminin G domain profile. / Laminin G domain / Laminin G domain / EGF-type aspartate/asparagine hydroxylation site / EGF-like domain ...Syndecan/Neurexin domain / Syndecan domain / Neurexin/syndecan/glycophorin C / putative band 4.1 homologues' binding motif / Laminin G domain / Laminin G domain profile. / Laminin G domain / Laminin G domain / EGF-type aspartate/asparagine hydroxylation site / EGF-like domain / Aspartic acid and asparagine hydroxylation site. / Epidermal growth factor-like domain. / EGF-like domain profile. / EGF-like domain / Concanavalin A-like lectin/glucanase domain superfamily
Similarity search - Domain/homology
CitationDate: 2018 Sep
Title: Structural Plasticity of Neurexin 1α: Implications for its Role as Synaptic Organizer
Authors: Liu J / Misra A / Reddy S / White M / Ren G
Contact author
  • Mark White (University of Texas Medical Branch, Texas, USA)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #1888
Type: mix / Software: (05) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.30 / P-value: 0.000154
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Neurexin 1a L5L6 / Specimen concentration: 2.00-4.00
BufferName: 20 mM HEPES pH 8, 150 mM NaCl, 0.5mM CaCl2 / pH: 8 / Comment: N1a Buffer
Entity #1014Name: L5L6 / Type: protein / Description: Neurexin 1a L5L6 / Formula weight: 44.499 / Num. of mol.: 1 / References: UniProt: Q9ULB1
Sequence: ADPVTFKTKS SYVALATLQA YTSMHLFFQF KTTSLDGLIL YNSGDGNDFI VVELVKGYLH YVFDLGNGAN LIKGSSNKPL NDNQWHNVMI SRDTSNLHTV KIDTKITTQI TAGARNLDLK SDLYIGGVAK ETYKSLPKLV HAKEGFQGCL ASVDLNGRLP DLISDALFCN ...Sequence:
ADPVTFKTKS SYVALATLQA YTSMHLFFQF KTTSLDGLIL YNSGDGNDFI VVELVKGYLH YVFDLGNGAN LIKGSSNKPL NDNQWHNVMI SRDTSNLHTV KIDTKITTQI TAGARNLDLK SDLYIGGVAK ETYKSLPKLV HAKEGFQGCL ASVDLNGRLP DLISDALFCN GQIERGCEGP STTCQEDSCS NQGVCLQQWD GFSCDCSMTS FSGPLCNDPG TTYIFSKGGG QITYKWPPND RPSTRADRLA IGFSTVQKEA VLVRVDSSSG LGDYLELHIH QGKIGVKFNV GTDDIAIEES NAIINDGKYH VVRFTRSGGN ATLQVDSWPV IERYPAGRQL TIFNSQATII IGGKEQGQPF QGQLSGLYYN GLKVLNMAAE NDANIAIVGN VRLVGEVPSA STSHHHHHH

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Experimental information

BeamInstrument name: Sealy Center For Structural Biology, UTMB-G Rigaku BioSAXS-1000
City: Galveston, TX / 国: USA / Type of source: X-ray in house / Wavelength: 0.15418 Å / Dist. spec. to detc.: 0.4838 mm
DetectorName: Rigaku BioSAXS-1000 / Type: Kratky-2D / Pixsize x: 0.001 mm
Scan
Title: Neurexin 1a L5L6 / Measurement date: Sep 6, 2016 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 10 sec. / Number of frames: 3 / Unit: 1/A /
MinMax
Q0.0165 0.6854
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 444 /
MinMax
Q0.0194 0.651164
P(R) point1 444
R0 100
Result
Type of curve: merged
ExperimentalStandardStandard errorPorod
MW39.8 kDa39.6 kDa0.1 43 kDa
Volume---69 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I039110 89 39647.6 48.5
Radius of gyration, Rg3 nm0.01 3.02 nm0.01

MinMaxError
D-10 0.5
Guinier point1 17 -

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