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- SASDCD7: Thermotoga maritima phosphodiesterase TM1595 (wildtype, TmPde) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDCD7
SampleThermotoga maritima phosphodiesterase TM1595 (wildtype, TmPde)
  • Thermotoga maritima phosphodiesterase (wildtype, TmPDE, TM1595) (protein), TmPde, Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Function / homology
Function and homology information


nucleic acid binding / nucleotide binding / metal ion binding
Similarity search - Function
: / DDH domain / DHH family / DHH phosphoesterase superfamily / DHHA1 domain / DHHA1 domain
Similarity search - Domain/homology
Uncharacterized protein
Similarity search - Component
Biological speciesThermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (bacteria)
CitationDate: 2017 Oct
Title: Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima
Authors: Drexler D / Müller M / Rojas-Cordova C / Bandera A
Contact author
  • Gregor Witte (Ludwig-Maximilians-Universität München)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #1503
Type: atomic / Radius of dummy atoms: 1.90 A / Comment: PDB not yet released / Chi-square value: 2.316
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Thermotoga maritima phosphodiesterase TM1595 (wildtype, TmPde)
Specimen concentration: 7 mg/ml
BufferName: 20mM Tris, 200 mM NaCl, 5%(v/v) glycerol / pH: 7.5
Entity #774Name: TmPde / Type: protein
Description: Thermotoga maritima phosphodiesterase (wildtype, TmPDE, TM1595)
Formula weight: 37.823 / Num. of mol.: 2
Source: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
References: UniProt: Q9X1T1
Sequence: GSGSGMDEIV KVLSQHDRIL VVGHIMPDGD CVSSVLSLTL GLEKLGKEVK AAVDYKIPYV FEKFPYIDKI EENPNFDPEL LVVVDASSPD RIGKFQDLLD KVPSVVIDHH STNTNFGNWN WVDPSFAATA QMIFRINKAL GVEYDSNLAT LNYLGIATDT GFFRHSNADV ...Sequence:
GSGSGMDEIV KVLSQHDRIL VVGHIMPDGD CVSSVLSLTL GLEKLGKEVK AAVDYKIPYV FEKFPYIDKI EENPNFDPEL LVVVDASSPD RIGKFQDLLD KVPSVVIDHH STNTNFGNWN WVDPSFAATA QMIFRINKAL GVEYDSNLAT LNYLGIATDT GFFRHSNADV RVFEDAYKLV KMGADAHFVA KEILENKRFE QFKLFAEVLE RLQLLENGKI AYSYIDYDTY LRHNCTDEDS AGFVGELRSI RGVEVAVLFM EFPRGKIHVS MRSKDWFNVN EVAFELGGGG HPRAAGVTFE GKKIEEVIPR VINHLLKKFK EGVESESEKI PEGDVLGG

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Experimental information

BeamInstrument name: PETRA III P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.123987 Å / Dist. spec. to detc.: 3 mm
DetectorName: Pilatus 2M
Scan
Title: Thermotoga maritima phosphodiesterase TM1595 (wildtype, TmPde)
Measurement date: Jun 23, 2015 / Cell temperature: 20 °C / Exposure time: 0.045 sec. / Number of frames: 34 / Unit: 1/nm /
MinMax
Q0.0611 3.1923
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 1187 /
MinMax
Q0.0610767 3.19229
P(R) point1 1187
R0 7.76
Result
Type of curve: single_conc /
ExperimentalPorod
MW67 kDa64 kDa
Volume-105.9 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I020030 16.4 19766 20.06
Radius of gyration, Rg2.73 nm0.002 2.67 nm0.01

MinMax
D-7.76
Guinier point1 130

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