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- SASDCB7: Streptococcus pneumoniae phosphodiesterase Pde2 (DHH subfamily 1 ... -

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Basic information

Entry
Database: SASBDB / ID: SASDCB7
SampleStreptococcus pneumoniae phosphodiesterase Pde2
  • DHH subfamily 1 protein (protein), SpnPde2, Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Function / homology: / DDH domain / DHH family / DHH phosphoesterase superfamily / DHHA1 domain / DHHA1 domain / nucleic acid binding / DHH subfamily 1 protein
Function and homology information
Biological speciesStreptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (bacteria)
CitationDate: 2017 Oct
Title: Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima
Authors: Drexler D / Müller M / Rojas-Cordova C / Bandera A
Contact author
  • Gregor Witte (Ludwig-Maximilians-Universität München)

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Structure visualization

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Models

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Sample

SampleName: Streptococcus pneumoniae phosphodiesterase Pde2 / Specimen concentration: 7 mg/ml
BufferName: 20mM Tris, 200 mM NaCl, 5%(v/v) glycerol / pH: 7.5
Entity #737Name: SpnPde2 / Type: protein / Description: DHH subfamily 1 protein / Formula weight: 35.053 / Num. of mol.: 2
Source: Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
References: UniProt: A0A0H2ZNP2
Sequence: SMEICQQILE KIKEYDTIII HRHMKPDPDA LGSQVGLKAL LEHHFPEKTI KAVGFDEPTL TWMAEMDLVE DRAYQGALVI VCDTANTARI DDKRYSQGDF LIKIDHHPND DVYGDLSWVD TSSSSASEMI TLFAQTTQLA LADRDAELLF AGIVGDTGRF LYPSTTARTL ...Sequence:
SMEICQQILE KIKEYDTIII HRHMKPDPDA LGSQVGLKAL LEHHFPEKTI KAVGFDEPTL TWMAEMDLVE DRAYQGALVI VCDTANTARI DDKRYSQGDF LIKIDHHPND DVYGDLSWVD TSSSSASEMI TLFAQTTQLA LADRDAELLF AGIVGDTGRF LYPSTTARTL RLAAYLREHN FDFAALTRKM DTMSYKIAKL QGYIYDHLEV DENGAARVIL SQEVLKQYNV TDAETAAIVG APGRIDRVSL WGIFVEQADG HYRVRLRSKI HPINEIAKEH DGGGHPLASG ANSYSLEENE IIYQKLKNLL KN

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Experimental information

BeamInstrument name: PETRA III P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.123987 Å / Dist. spec. to detc.: 3 mm
DetectorName: Pilatus 2M
Scan
Title: Streptococcus pneumoniae phosphodiesterase Pde2 / Measurement date: Jun 23, 2015 / Cell temperature: 20 °C / Exposure time: 0.045 sec. / Number of frames: 39 / Unit: 1/nm /
MinMax
Q0.0268 4.8081
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 1104 /
MinMax
Q0.0610767 2.97316
P(R) point1 1104
R0 7.74
Result
Type of curve: single_conc /
ExperimentalPorod
MW57 kDa67 kDa
Volume-86.56 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I021410 13.4 21234 19.57
Radius of gyration, Rg2.72 nm0.148 2.69 nm0.23

MinMax
D-7.74
Guinier point14 146

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