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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | CryoEM structure of Klebsiella phage Kp7 icosahedral head | |||||||||
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![]() | Podophage / icosahedral head / ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Huang L / Xiang Y | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structure and assembly of the Klebsiella pneumoniae phage tail fibers Authors: Huang L / Xiang Y | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 386.2 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 13.9 KB 13.9 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 35.2 KB | Display | ![]() |
Images | ![]() | 20.7 KB | ||
Others | ![]() ![]() | 3 GB 3 GB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7y3tMC ![]() 7xy1C ![]() 7xycC ![]() 7y1cC ![]() 7y22C ![]() 7y23C ![]() 7y5sC M: atomic model generated by this map C: citing same article ( |
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Voxel size | X=Y=Z: 1.17 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #1
File | emd_33598_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_33598_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Klebsiella phage Kp7
Entire | Name: ![]() |
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Components |
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-Supramolecule #1: Klebsiella phage Kp7
Supramolecule | Name: Klebsiella phage Kp7 / type: virus / ID: 1 / Parent: 0 / Macromolecule list: all / NCBI-ID: 2936515 / Sci species name: Klebsiella phage Kp7 / Virus type: VIRION / Virus isolate: SPECIES / Virus enveloped: No / Virus empty: No |
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Host (natural) | Organism: ![]() |
Virus shell | Shell ID: 1 / Diameter: 600.0 Å / T number (triangulation number): 7 |
-Macromolecule #1: phage major capsid protein
Macromolecule | Name: phage major capsid protein / type: protein_or_peptide / ID: 1 / Number of copies: 7 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 39.74375 KDa |
Sequence | String: MSTPNVLTNV AVSHSGEVDS LLIEKFNGKV REQYLKGENL LSHFQVETVT GTNTVSNKYL GETEIQVLAP GQSPAATPTK ADKNQVVID TTVIARNTVA MLHDVQGDID SLKPKIAVNQ AKQLKRLEDE MVVQQLMLGG ISNTKAQRTN PRVPGHGFSI N VNITADTA ...String: MSTPNVLTNV AVSHSGEVDS LLIEKFNGKV REQYLKGENL LSHFQVETVT GTNTVSNKYL GETEIQVLAP GQSPAATPTK ADKNQVVID TTVIARNTVA MLHDVQGDID SLKPKIAVNQ AKQLKRLEDE MVVQQLMLGG ISNTKAQRTN PRVPGHGFSI N VNITADTA ETSPQYLAAA IEYALEQQLE QEVDISDLVI LMPWKFFNAL RDMDRIVDRS YTLADESTVQ GFALKSFNVP VV PSNRFPK FSQGAAHHKL SNADNGFRYD TTAPMAGAVA VIFSMDALLV GRTIELTGDI FWEKKEKTFY IDTYLAEGAI PDR WEAVSV VTTARNATTG DPDGTGADDT VVTKRANRKV ILTKAVS |
-Experimental details
-Structure determination
Method | ![]() |
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Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.5 |
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Grid | Model: Quantifoil R2/2 / Material: COPPER / Mesh: 200 |
Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TALOS ARCTICA |
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Electron beam | Acceleration voltage: 200 kV / Electron source: ![]() |
Electron optics | C2 aperture diameter: 50.0 µm / Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: COUNTING / Digitization - Dimensions - Width: 3710 pixel / Digitization - Dimensions - Height: 3710 pixel / Average electron dose: 50.0 e/Å2 |
Experimental equipment | ![]() Model: Talos Arctica / Image courtesy: FEI Company |