[English] 日本語
![](img/lk-miru.gif)
- EMDB-33623: CryoEM structure of Klebsiella phage Kp7 type I tail fiber gp51 i... -
+
Open data
-
Basic information
Entry | ![]() | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | CryoEM structure of Klebsiella phage Kp7 type I tail fiber gp51 in vitro | |||||||||
![]() | ||||||||||
![]() |
| |||||||||
![]() | Phage type I tail fiber / ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Huang L / Xiang Y | |||||||||
Funding support | ![]()
| |||||||||
![]() | ![]() Title: Structure and assembly of the Klebsiella pneumoniae phage tail fibers Authors: Huang L / Xiang Y | |||||||||
History |
|
-
Structure visualization
Supplemental images |
---|
-
Downloads & links
-EMDB archive
Map data | ![]() | 26.9 MB | ![]() | |
---|---|---|---|---|
Header (meta data) | ![]() ![]() | 14.1 KB 14.1 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 7.1 KB | Display | ![]() |
Images | ![]() | 19.3 KB | ||
Others | ![]() ![]() | 23.5 MB 23.5 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7y5sMC ![]() 7xy1C ![]() 7xycC ![]() 7y1cC ![]() 7y22C ![]() 7y23C ![]() 7y3tC M: atomic model generated by this map C: citing same article ( |
---|
-
Links
EMDB pages | ![]() ![]() |
---|
-
Map
File | ![]() | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Voxel size | X=Y=Z: 1.0979 Å | ||||||||||||||||||||
Density |
| ||||||||||||||||||||
Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
|
-Supplemental data
-Half map: #1
File | emd_33623_half_map_1.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-Half map: #2
File | emd_33623_half_map_2.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-
Sample components
-Entire : Klebsiella phage Kp7 type I tail fiber
Entire | Name: Klebsiella phage Kp7 type I tail fiber |
---|---|
Components |
|
-Supramolecule #1: Klebsiella phage Kp7 type I tail fiber
Supramolecule | Name: Klebsiella phage Kp7 type I tail fiber / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all / Details: Trimer of tail fiber proteins |
---|---|
Source (natural) | Organism: ![]() |
-Macromolecule #1: phage tail fiber
Macromolecule | Name: phage tail fiber / type: protein_or_peptide / ID: 1 / Number of copies: 3 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 73.019125 KDa |
Recombinant expression | Organism: ![]() ![]() ![]() |
Sequence | String: MSVTRLTSSL VRWKSKLANA IQRSLSSKME ESLSVLDFGA VADYNPTTKT GTDNTQAFRN AVAAAIAQNI RNVYAPGGPS AYMTTGEIN LGGEGFTGGE GSRDVWRGIT QGVHFFGDGP YSTIIAFNPP NTDAPCFSAR GGWGTHSPRA LSKLAIEPVN W ADYNATSS ...String: MSVTRLTSSL VRWKSKLANA IQRSLSSKME ESLSVLDFGA VADYNPTTKT GTDNTQAFRN AVAAAIAQNI RNVYAPGGPS AYMTTGEIN LGGEGFTGGE GSRDVWRGIT QGVHFFGDGP YSTIIAFNPP NTDAPCFSAR GGWGTHSPRA LSKLAIEPVN W ADYNATSS GTGVLLQGCC FVPVTDVHIG RFHRGIHFWN KLQGTDDPTN TFTKGDFTEF NRITRVRVFN CDIDVDYQVS LG NNSFHGN SFTDCMCQIN SYGGIGMRMW DDGSRNAIRP SSLPYEYIAN VYNNKHEINW FGSDARTCYL MHIDKAQGRG CNG DMTVEA AVTLRAIGQY WYQSFGSLHS ISAINTVVDG DTDTATRPVA FMWMNSAYPQ VNFDGTDPLL TSGLTPRQYD LNNS GNTGM ELLNIRGANT GAIWSIQNGA ALGWILGRRA QADSRKGTRS VWQFSYNGEV IKSVSAANVG LQNSTGAGFG MLGDT LLRP YAASTISLGS PTYPFTRLRT TDWTVDTNGI VPVQDGIKNI GSSSLRVGTV FAATGTINTS DARLKTEVRP FTSEEI LAA KALSEEIGMY QWVASIESKG DNAREHCGLT VQRAMEVMQQ HGLDPFNYGF ICHDVWDEVV EVSDETGEVI SSTPAGD RY SFRFDQLSLF ISRGIEARMS ELESRM |
-Experimental details
-Structure determination
Method | ![]() |
---|---|
![]() | ![]() |
Aggregation state | particle |
-
Sample preparation
Buffer | pH: 7.5 |
---|---|
Grid | Model: Quantifoil R1.2/1.3 / Material: COPPER / Mesh: 200 |
Vitrification | Cryogen name: ETHANE |
-
Electron microscopy
Microscope | FEI TITAN KRIOS |
---|---|
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | C2 aperture diameter: 50.0 µm / Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: GATAN K3 (6k x 4k) / Digitization - Dimensions - Width: 5760 pixel / Digitization - Dimensions - Height: 4092 pixel / Average electron dose: 50.0 e/Å2 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
-
Image processing
-Atomic model buiding 1
Refinement | Protocol: AB INITIO MODEL |
---|---|
Output model | ![]() PDB-7y5s: |