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Open data
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Basic information
Entry | Database: PDB / ID: 1ai6 | ||||||
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Title | PENICILLIN ACYLASE WITH P-HYDROXYPHENYLACETIC ACID | ||||||
![]() | (PENICILLIN AMIDOHYDROLASE) x 2 | ||||||
![]() | ANTIBIOTIC RESISTANCE / LIGAND INDUCED CONFORMATIONAL CHANGE / HYDROLASE | ||||||
Function / homology | ![]() penicillin amidase / penicillin amidase activity / antibiotic biosynthetic process / periplasmic space / response to antibiotic / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Done, S.H. | ||||||
![]() | ![]() Title: Ligand-induced conformational change in penicillin acylase. Authors: Done, S.H. / Brannigan, J.A. / Moody, P.C.E. / Hubbard, R.E. #2: ![]() Title: Penicillin Acylase Has a Single-Amino-Acid Catalytic Centre Authors: Duggleby, H.J. / Tolley, S.P. / Hill, C.P. / Dodson, E.J. / Dodson, G. / Moody, P.C. #3: ![]() Title: Expression, Purification and Crystallization of Penicillin G Acylase from Escherichia Coli Atcc 11105 Authors: Hunt, P.D. / Tolley, S.P. / Ward, R.J. / Hill, C.P. / Dodson, G.G. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 177 KB | Display | ![]() |
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PDB format | ![]() | 136.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 1ai4C ![]() 1ai5C ![]() 1ai7C ![]() 1ajnC ![]() 1ajpC ![]() 1ajqC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 23838.824 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
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#2: Protein | Mass: 62428.512 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
#3: Chemical | ChemComp-CA / |
#4: Chemical | ChemComp-4HP / |
#5: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.06 Å3/Da / Density % sol: 59.5 % | ||||||||||||||||||||||||||||||
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Crystal grow | Method: batch method / pH: 7.2 Details: CRYSTALLIZED FROM 12% PEG 8000, 50MM MOPS PH 7.2. BATCH METHOD. SOAKED IN 5MM P-HYDROXYPHENYLACETIC ACID, batch method | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 300 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS II / Detector: IMAGE PLATE / Date: Aug 1, 1994 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.55→28.06 Å / Num. obs: 26089 / % possible obs: 95.6 % / Redundancy: 2 % / Biso Wilson estimate: 19 Å2 / Rmerge(I) obs: 0.38 / Net I/σ(I): 12.6 |
Reflection shell | Resolution: 2.55→2.7 Å / Redundancy: 1.9 % / Rmerge(I) obs: 0.0071 / Mean I/σ(I) obs: 9.5 / % possible all: 88.1 |
Reflection | *PLUS Num. measured all: 51401 / Rmerge(I) obs: 0.038 |
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Processing
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Refinement | Method to determine structure: ISOMORPHOUS TO NATIVE Starting model: ISOMORPHOUS TO NATIVE Resolution: 2.55→28.06 Å / Cross valid method: FREE R / σ(F): 0 / Details: STRUCTURE ISOMORPHOUS TO NATIVE
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Displacement parameters | Biso mean: 40.98 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.55→28.06 Å
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Refine LS restraints |
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Software | *PLUS Name: REFMAC / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Num. reflection all: 26089 / Rfactor all: 0.1366 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |