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Yorodumi- PDB-6h82: Cryo-EM structure of the archaeal extremophilic internal membrane... -
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-Basic information
Entry | Database: PDB / ID: 6h82 | |||||||||||||||
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Title | Cryo-EM structure of the archaeal extremophilic internal membrane containing Haloarcula hispanica icosahedral virus 2 (HHIV-2) at 3.78 Angstroms resolution. | |||||||||||||||
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Keywords | VIRUS / single vertical beta-barrel virus / archaeal / membrane-containing / quasi-atomic resolution | |||||||||||||||
Function / homology | VP7 / VP4 / Uncharacterized protein Function and homology information | |||||||||||||||
Biological species | Haloarcula hispanica icosahedral virus 2 | |||||||||||||||
Method | ELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 3.78 Å | |||||||||||||||
Authors | Abrescia, N.G. / Santos-Perez, I. / Charro, D. | |||||||||||||||
Funding support | Spain, Finland, 4items
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Citation | Journal: Nat Commun / Year: 2019 Title: Structural basis for assembly of vertical single β-barrel viruses. Authors: Isaac Santos-Pérez / Diego Charro / David Gil-Carton / Mikel Azkargorta / Felix Elortza / Dennis H Bamford / Hanna M Oksanen / Nicola G A Abrescia / Abstract: The vertical double β-barrel major capsid protein (MCP) fold, fingerprint of the PRD1-adeno viral lineage, is widespread in many viruses infecting organisms across the three domains of life. The ...The vertical double β-barrel major capsid protein (MCP) fold, fingerprint of the PRD1-adeno viral lineage, is widespread in many viruses infecting organisms across the three domains of life. The discovery of PRD1-like viruses with two MCPs challenged the known assembly principles. Here, we present the cryo-electron microscopy (cryo-EM) structures of the archaeal, halophilic, internal membrane-containing Haloarcula californiae icosahedral virus 1 (HCIV-1) and Haloarcula hispanica icosahedral virus 2 (HHIV-2) at 3.7 and 3.8 Å resolution, respectively. Our structures reveal proteins located beneath the morphologically distinct two- and three-tower capsomers and homopentameric membrane proteins at the vertices that orchestrate the positioning of pre-formed vertical single β-barrel MCP heterodimers. The cryo-EM based structures together with the proteomics data provide insights into the assembly mechanism of this type of viruses and into those with membrane-less double β-barrel MCPs. #1: Journal: Structure / Year: 2015 Title: Insight into the Assembly of Viruses with Vertical Single β-barrel Major Capsid Proteins. Authors: David Gil-Carton / Salla T Jaakkola / Diego Charro / Bibiana Peralta / Daniel Castaño-Díez / Hanna M Oksanen / Dennis H Bamford / Nicola G A Abrescia / Abstract: Archaeal viruses constitute the least explored niche within the virosphere. Structure-based approaches have revealed close relationships between viruses infecting organisms from different domains of ...Archaeal viruses constitute the least explored niche within the virosphere. Structure-based approaches have revealed close relationships between viruses infecting organisms from different domains of life. Here, using biochemical and cryo-electron microscopy techniques, we solved the structure of euryarchaeal, halophilic, internal membrane-containing Haloarcula hispanica icosahedral virus 2 (HHIV-2). We show that the density of the two major capsid proteins (MCPs) recapitulates vertical single β-barrel proteins and that disulfide bridges stabilize the capsid. Below, ordered density is visible close to the membrane and at the five-fold vertices underneath the host-interacting vertex complex underpinning membrane-protein interactions. The HHIV-2 structure exemplifies the division of conserved architectural elements of a virion, such as the capsid, from those that evolve rapidly due to selective environmental pressure such as host-recognizing structures. We propose that in viruses with two vertical single β-barrel MCPs the vesicle is indispensable, and membrane-protein interactions serve as protein-railings for guiding the assembly. | |||||||||||||||
History |
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-Structure visualization
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Structure viewer | Molecule: MolmilJmol/JSmol |
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PDBx/mmCIF format | 6h82.cif.gz | 1.7 MB | Display | PDBx/mmCIF format |
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PDB format | pdb6h82.ent.gz | 1.5 MB | Display | PDB format |
PDBx/mmJSON format | 6h82.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6h82_validation.pdf.gz | 1.3 MB | Display | wwPDB validaton report |
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Full document | 6h82_full_validation.pdf.gz | 1.3 MB | Display | |
Data in XML | 6h82_validation.xml.gz | 162.2 KB | Display | |
Data in CIF | 6h82_validation.cif.gz | 252.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/h8/6h82 ftp://data.pdbj.org/pub/pdb/validation_reports/h8/6h82 | HTTPS FTP |
-Related structure data
Related structure data | 0172MC 0050C 0072C 0073C 0131C 0174C 6h9cC C: citing same article (ref.) M: map data used to model this data |
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Similar structure data |
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Noncrystallographic symmetry (NCS) | NCS oper:
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