- PDB-6cgv: Revised crystal structure of human adenovirus -
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IDまたはキーワード:
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基本情報
登録情報
データベース: PDB / ID: 6cgv
タイトル
Revised crystal structure of human adenovirus
要素
(Pre-hexon-linking protein ...) x 2
Hexon protein
Hexon-interlacing protein
Penton protein
Pre-protein VI
キーワード
VIRUS / Human adenovirus Crystal structure Ad5F35 Ad35F
機能・相同性
機能・相同性情報
protein transport along microtubule / hexon binding / viral capsid, decoration / T=25 icosahedral viral capsid / lysis of host organelle involved in viral entry into host cell / viral procapsid / microtubule-dependent intracellular transport of viral material towards nucleus / viral release from host cell / viral life cycle / viral capsid ...protein transport along microtubule / hexon binding / viral capsid, decoration / T=25 icosahedral viral capsid / lysis of host organelle involved in viral entry into host cell / viral procapsid / microtubule-dependent intracellular transport of viral material towards nucleus / viral release from host cell / viral life cycle / viral capsid / host cell / clathrin-dependent endocytosis of virus by host cell / host cell cytoplasm / symbiont entry into host cell / virion attachment to host cell / host cell nucleus / structural molecule activity 類似検索 - 分子機能
Pre-hexon-linking protein IIIa / Hexon-associated protein IX / Adenovirus hexon-associated protein (IX) / Pre-hexon-linking protein IIIa / Pre-hexon-linking protein IIIa, N-terminal / Hexon-associated protein (IIIa) / Pre-hexon-linking protein VIII / Adenovirus hexon associated protein, protein VIII / Minor capsid protein VI / Minor capsid protein VI ...Pre-hexon-linking protein IIIa / Hexon-associated protein IX / Adenovirus hexon-associated protein (IX) / Pre-hexon-linking protein IIIa / Pre-hexon-linking protein IIIa, N-terminal / Hexon-associated protein (IIIa) / Pre-hexon-linking protein VIII / Adenovirus hexon associated protein, protein VIII / Minor capsid protein VI / Minor capsid protein VI / Adenovirus hexon protein / Adenovirus Pll, hexon, N-terminal / Adenovirus Pll, hexon, C-terminal / Adenovirus Pll, hexon, subdomain 2 / Hexon, adenovirus major coat protein, N-terminal domain / Hexon, adenovirus major coat protein, C-terminal domain / Adenovirus penton base protein / Adenovirus penton base protein / Group II dsDNA virus coat/capsid protein / Four Helix Bundle (Hemerythrin (Met), subunit A) / Up-down Bundle / Mainly Alpha 類似検索 - ドメイン・相同性
Hexon-interlacing protein / Hexon protein / Pre-hexon-linking protein IIIa / Penton protein / Pre-hexon-linking protein VIII / Pre-protein VI 類似検索 - 構成要素
#1: ジャーナル: Proc. Natl. Acad. Sci. U.S.A. / 年: 2014 タイトル: Structures and organization of adenovirus cement proteins provide insights into the role of capsid maturation in virus entry and infection. 著者: Reddy, V.S. / Nemerow, G.R.
#200 - 2016年8月 正二十面体型ウイルスの準対称性 (Quasisymmetry in Icosahedral Viruses) 類似性 (1)
#241 - 2020年1月 20年の分子を振り返って (Twenty Years of Molecules) 類似性 (1)
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集合体
登録構造単位
A: Hexon protein B: Hexon protein C: Hexon protein D: Hexon protein E: Hexon protein F: Hexon protein G: Hexon protein H: Hexon protein I: Hexon protein J: Hexon protein K: Hexon protein L: Hexon protein N: Penton protein M: Pre-hexon-linking protein IIIa P: Hexon-interlacing protein Q: Hexon-interlacing protein R: Hexon-interlacing protein S: Hexon-interlacing protein U: Pre-hexon-linking protein VIII V: Pre-hexon-linking protein VIII W: Pre-protein VI
A: Hexon protein B: Hexon protein C: Hexon protein D: Hexon protein E: Hexon protein F: Hexon protein G: Hexon protein H: Hexon protein I: Hexon protein J: Hexon protein K: Hexon protein L: Hexon protein N: Penton protein M: Pre-hexon-linking protein IIIa P: Hexon-interlacing protein Q: Hexon-interlacing protein R: Hexon-interlacing protein S: Hexon-interlacing protein U: Pre-hexon-linking protein VIII V: Pre-hexon-linking protein VIII W: Pre-protein VI
A: Hexon protein B: Hexon protein C: Hexon protein D: Hexon protein E: Hexon protein F: Hexon protein G: Hexon protein H: Hexon protein I: Hexon protein J: Hexon protein K: Hexon protein L: Hexon protein N: Penton protein M: Pre-hexon-linking protein IIIa P: Hexon-interlacing protein Q: Hexon-interlacing protein R: Hexon-interlacing protein S: Hexon-interlacing protein U: Pre-hexon-linking protein VIII V: Pre-hexon-linking protein VIII W: Pre-protein VI
x 5
icosahedral pentamer
7.66 MDa, 105 ポリマー
分子量 (理論値)
分子数
合計 (水以外)
7,661,370
105
ポリマ-
7,661,370
105
非ポリマー
0
0
水
0
タイプ
名称
対称操作
数
identity operation
1_555
x,y,z
1
point symmetry operation
4
4
A: Hexon protein B: Hexon protein C: Hexon protein D: Hexon protein E: Hexon protein F: Hexon protein G: Hexon protein H: Hexon protein I: Hexon protein J: Hexon protein K: Hexon protein L: Hexon protein N: Penton protein M: Pre-hexon-linking protein IIIa P: Hexon-interlacing protein Q: Hexon-interlacing protein R: Hexon-interlacing protein S: Hexon-interlacing protein U: Pre-hexon-linking protein VIII V: Pre-hexon-linking protein VIII W: Pre-protein VI
x 6
icosahedral 23 hexamer
9.19 MDa, 126 ポリマー
分子量 (理論値)
分子数
合計 (水以外)
9,193,644
126
ポリマ-
9,193,644
126
非ポリマー
0
0
水
0
タイプ
名称
対称操作
数
identity operation
1_555
x,y,z
1
point symmetry operation
5
5
登録構造と同一(異なる座標系)
icosahedral asymmetric unit, std point frame
タイプ
名称
対称操作
数
transform to point frame
1
6
A: Hexon protein B: Hexon protein C: Hexon protein D: Hexon protein E: Hexon protein F: Hexon protein G: Hexon protein H: Hexon protein I: Hexon protein J: Hexon protein K: Hexon protein L: Hexon protein N: Penton protein M: Pre-hexon-linking protein IIIa P: Hexon-interlacing protein Q: Hexon-interlacing protein R: Hexon-interlacing protein S: Hexon-interlacing protein U: Pre-hexon-linking protein VIII V: Pre-hexon-linking protein VIII W: Pre-protein VI