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- PDB-5odf: NtMe polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamid... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5odf | ||||||||||||||||||||
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Title | NtMe polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies | ||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA BINDING PROTEIN / DNA / Minor groove binders / Hairpin polyamides | Function / homology | NtMe polyamide / DNA / DNA (> 10) | ![]() Biological species | ![]() Method | SOLUTION NMR / molecular dynamics | ![]() Padroni, G. / Parkinson, J. / Burley, G.A. | ![]() ![]() Title: Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides. Authors: Padroni, G. / Parkinson, J.A. / Fox, K.R. / Burley, G.A. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 190.3 KB | Display | ![]() |
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PDB format | ![]() | 154.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 533 KB | Display | ![]() |
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Full document | ![]() | 730.5 KB | Display | |
Data in XML | ![]() | 23.2 KB | Display | |
Data in CIF | ![]() | 30.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5oczC ![]() 5odmC ![]() 5oe1C C: citing same article ( |
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Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 3582.424 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) ![]() #2: Chemical | ChemComp-CWN / | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 100 Phosphate mM / Label: NtMe PA / pH: 7.4 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 3 | ||||||||||||||||||
NMR representative | Selection criteria: na | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: na / Conformers calculated total number: 10 / Conformers submitted total number: 10 |