+Open data
-Basic information
Entry | Database: PDB / ID: 1amt | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal structure of alamethicin at 1.5 angstrom resolution | ||||||
Components | ALAMETHICIN F30 | ||||||
Keywords | ANTIBIOTIC / ALAMETHICIN / PEPTAIBOL / ANTIBACTERIAL / ANTIFUNGAL | ||||||
Function / homology | Alamethicin / ACETONITRILE / METHANOL / : Function and homology information | ||||||
Biological species | TRICHODERMA VIRIDE (fungus) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.5 Å | ||||||
Authors | Fox, R.O. / Richards, F.M. | ||||||
Citation | Journal: Nature / Year: 1982 Title: A Voltage-Gated Ion Channel Model Inferred from the Crystal Structure of Alamethicin at 1.5-A Resolution. Authors: Fox Jr, R.O. / Richards, F.M. #1: Journal: Thesis, Yale Title: The Crystal Structure of Alamethicin at 1.5 Angstroms Resolution Authors: Fox, R.O. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1amt.cif.gz | 19.2 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1amt.ent.gz | 16.5 KB | Display | PDB format |
PDBx/mmJSON format | 1amt.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1amt_validation.pdf.gz | 404.4 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 1amt_full_validation.pdf.gz | 413.2 KB | Display | |
Data in XML | 1amt_validation.xml.gz | 4.7 KB | Display | |
Data in CIF | 1amt_validation.cif.gz | 5.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/am/1amt ftp://data.pdbj.org/pub/pdb/validation_reports/am/1amt | HTTPS FTP |
-Related structure data
Related structure data | |
---|---|
Similar structure data |
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-Components
#1: Protein/peptide | #2: Chemical | #3: Chemical | ChemComp-MOH / Compound details | ALAMETHICIN F30 IS LINEAR PEPTIDE, A MEMBER OF THE PEPTAIBOL FAMILY OF MEMBRANE CHANNEL FORMING ...ALAMETHICI | |
---|
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
---|
-Sample preparation
Crystal | Density Matthews: 1.71 Å3/Da / Density % sol: 28.2 % | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Crystal grow | *PLUS Method: unknown | |||||||||
Components of the solutions | *PLUS
|
-Data collection
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
---|---|
Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.5 Å |
-Processing
Software | Name: PROLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 1.5→10 Å /
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.5→10 Å
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.5 Å / Lowest resolution: 10 Å / Num. reflection obs: 5458 / Rfactor obs: 0.155 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 15 Å2 |