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Yorodumi- PDB-1bzk: STRUCTURAL STUDIES ON THE EFFECTS OF THE DELETION IN THE RED CELL... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1bzk | ||||||
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Title | STRUCTURAL STUDIES ON THE EFFECTS OF THE DELETION IN THE RED CELL ANION EXCHANGER (BAND3, AE1) ASSOCIATED WITH SOUTH EAST ASIAN OVALOCYTOSIS. | ||||||
Components | PROTEIN (BAND 3 ANION TRANSPORT PROTEIN) | ||||||
Keywords | TRANSPORT PROTEIN / HUMAN ERYTHROCYTE ANION TRANSPORTER / TRANSMEMBRANE / SYNTHETIC PEPTIDE | ||||||
Function / homology | Function and homology information pH elevation / Defective SLC4A1 causes hereditary spherocytosis type 4 (HSP4), distal renal tubular acidosis (dRTA) and dRTA with hemolytic anemia (dRTA-HA) / negative regulation of urine volume / Bicarbonate transporters / intracellular monoatomic ion homeostasis / ankyrin-1 complex / plasma membrane phospholipid scrambling / monoatomic anion transmembrane transporter activity / chloride:bicarbonate antiporter activity / solute:inorganic anion antiporter activity ...pH elevation / Defective SLC4A1 causes hereditary spherocytosis type 4 (HSP4), distal renal tubular acidosis (dRTA) and dRTA with hemolytic anemia (dRTA-HA) / negative regulation of urine volume / Bicarbonate transporters / intracellular monoatomic ion homeostasis / ankyrin-1 complex / plasma membrane phospholipid scrambling / monoatomic anion transmembrane transporter activity / chloride:bicarbonate antiporter activity / solute:inorganic anion antiporter activity / bicarbonate transmembrane transporter activity / bicarbonate transport / monoatomic anion transport / chloride transmembrane transporter activity / chloride transport / erythrocyte development / negative regulation of glycolytic process through fructose-6-phosphate / ankyrin binding / hemoglobin binding / cortical cytoskeleton / protein-membrane adaptor activity / chloride transmembrane transport / protein localization to plasma membrane / regulation of intracellular pH / Erythrocytes take up oxygen and release carbon dioxide / Erythrocytes take up carbon dioxide and release oxygen / transmembrane transport / cytoplasmic side of plasma membrane / Z disc / blood coagulation / basolateral plasma membrane / blood microparticle / protein homodimerization activity / extracellular exosome / membrane / plasma membrane Similarity search - Function | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Chambers, E.J. / Bloomberg, G.B. / Ring, S.M. / Tanner, M.J.A. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1999 Title: Structural studies on the effects of the deletion in the red cell anion exchanger (band 3, AE1) associated with South East Asian ovalocytosis. Authors: Chambers, E.J. / Bloomberg, G.B. / Ring, S.M. / Tanner, M.J. #1: Journal: Biochem.Soc.Trans. / Year: 1998 Title: Studies on the Structure of a Transmembrane Region and a Cytoplasmic Loop of the Human Red Cell Anion Exchanger (Band3, AE1) Authors: Chambers, E.J. / Bloomberg, G.B. / Ring, S.M. / Tanner, M.J.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bzk.cif.gz | 273.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bzk.ent.gz | 229 KB | Display | PDB format |
PDBx/mmJSON format | 1bzk.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bz/1bzk ftp://data.pdbj.org/pub/pdb/validation_reports/bz/1bzk | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 4628.324 Da / Num. of mol.: 1 / Fragment: C-TERMINAL CYTOPLASM/FIRST MEMBRANE SPAN / Source method: obtained synthetically Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED USING FMOC PEPTIDE STRATEGY. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN THE CYTOPLASM/MEMBRANE RED CELL OF HOMO SAPIENS. References: UniProt: P02730 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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NMR details | Text: THE STRUCTURE WAS DETERMINED USING 2D HOMONUCLEAR AND 2D N-15/H-1 HETERONUCLEAR NMR SPECTROSCOPY. |
-Sample preparation
Sample conditions | pH: 3.5 / Pressure: 1 atm / Temperature: 298 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: JEOL ALPHA 500 / Manufacturer: JEOL / Model: ALPHA 500 / Field strength: 500 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: REFINEMENT DETAILS CAN BE FOUND IN THE EUR. J. BIOCHEM. 1994, V221, 445-454. | ||||||||||||
NMR ensemble | Conformer selection criteria: NO NOE VIOLATIONS GREATER THAN 0.05 NM, NO DIHEDRAL VIOLATIONS GREATER THAN 5 DEGREES. Conformers calculated total number: 50 / Conformers submitted total number: 21 |