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Structure paper

TitleMolecular basis for ubiquitin-independent substrate degradation by midnolin-proteasome
Journal, issue, pagesTo Be Published
Publish dateMar 13, 2025 (structure data deposition date)
AuthorsZhu C / Qin L
External linksSearch PubMed
MethodsEM (single particle)
Resolution2.75 - 4.14 Å
Structure data

EMDB-63725: Focused refinement of 19S in the substrate-engaged human 26S proteasome bound to midnolin with RPT1 at top of spiral staircase
Method: EM (single particle) / Resolution: 3.34 Å

EMDB-63726: Consensus map of substrate-engaged human 26S proteasome bound to midnolin with RPT1 at top of spiral staircase
Method: EM (single particle) / Resolution: 2.75 Å

EMDB-63727: Consensus map of substrate-engaged human 26S proteasome bound to midnolin with RPT5 at top of spiral staircase
Method: EM (single particle) / Resolution: 2.93 Å

EMDB-63728: Focused refinement of 19S in the substrate-engaged human 26S proteasome bound to midnolin with RPT5 at top of spiral staircase
Method: EM (single particle) / Resolution: 3.44 Å

EMDB-63751: Consensus map of substrate-engaged human 26S proteasome bound to midnolin with RPT2 at top of spiral staircase
Method: EM (single particle) / Resolution: 2.91 Å

EMDB-63752: Focused refinement of 19S in the substrate-engaged human 26S proteasome bound to midnolin with RPT2 at top of spiral staircase
Method: EM (single particle) / Resolution: 3.5 Å

PDB-9mbo:
Focused refinement of RPN1 and the C-terminal helix of midnolin in the substrate-engaged human 26S proteasome
Method: ELECTRON MICROSCOPY / Resolution: 2.83 Å

PDB-9mbp:
Substrate-engaged human 26S proteasome bound to midnolin with RPT1 at top of spiral staircase
Method: ELECTRON MICROSCOPY / Resolution: 2.75 Å

PDB-9mbq:
Substrate-engaged human 26S proteasome bound to midnolin with RPT5 at top of spiral staircase
Method: ELECTRON MICROSCOPY / Resolution: 3.08 Å

PDB-9u3l:
Substrate-engaged human 26S proteasome bound to midnolin with RPT2 at top of spiral staircase
Method: ELECTRON MICROSCOPY / Resolution: 2.91 Å

PDB-9u4m:
Focused refinement of 19S in the substrate-engaged human 26S proteasome bound to midnolin with RPT6 at top of spiral staircase
Method: ELECTRON MICROSCOPY / Resolution: 4.14 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-LDZ:
N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-4-methyl-1-oxopentan-2-yl]-L-leucinamide / inhibitor*YM

Source
  • homo sapiens (human)
KeywordsHYDROLASE / Midnolin / 26S proteasome / Complex

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