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Structure paper

TitleExperimental phasing opportunities for macromolecular crystallography at very long wavelengths.
Journal, issue, pagesCommun Chem, Vol. 6, Page 219-219, Year 2023
Publish dateJul 20, 2023 (structure data deposition date)
AuthorsEl Omari, K. / Duman, R. / Mykhaylyk, V. / Orr, C.M. / Latimer-Smith, M. / Winter, G. / Grama, V. / Qu, F. / Bountra, K. / Kwong, H.S. ...El Omari, K. / Duman, R. / Mykhaylyk, V. / Orr, C.M. / Latimer-Smith, M. / Winter, G. / Grama, V. / Qu, F. / Bountra, K. / Kwong, H.S. / Romano, M. / Reis, R.I. / Vogeley, L. / Vecchia, L. / Owen, C.D. / Wittmann, S. / Renner, M. / Senda, M. / Matsugaki, N. / Kawano, Y. / Bowden, T.A. / Moraes, I. / Grimes, J.M. / Mancini, E.J. / Walsh, M.A. / Guzzo, C.R. / Owens, R.J. / Jones, E.Y. / Brown, D.G. / Stuart, D.I. / Beis, K. / Wagner, A.
External linksCommun Chem / PubMed:37828292
MethodsX-ray diffraction
Resolution1.6 - 3.77 Å
Structure data

PDB-8pwn:
Structure of A2A adenosine receptor A2AR-StaR2-bRIL, solved at wavelength 2.75 A
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-8px0:
Structure of ribonuclease A, solved at wavelength 2.75 A
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-8px1:
Structure of salmonella effector SseK3, solved at wavelength 2.75 A
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8px4:
Structure of the PAS domain code by the LIC_11128 gene from Leptospira interrogans serovar Copenhageni Fiocruz, solved at wavelength 3.09 A
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-8px5:
Structure of the RNA recognition motif (RRM) of Seb1 from S. pombe., solved at wavelength 2.75 A
Method: X-RAY DIFFRACTION / Resolution: 1.77 Å

PDB-8px7:
Structure of Bacterial Multidrug Efflux transporter AcrB, solved at wavelength 3.02 A
Method: X-RAY DIFFRACTION / Resolution: 3.4 Å

PDB-8px9:
Structure of the antibacterial peptide ABC transporter McjD, solved at wavelength 2.75 A
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-8pxc:
Structure of Fap1, a domain of the accessory Sec-dependent serine-rich glycoprotein adhesin from Streptococcus oralis, solved at wavelength 3.06 A
Method: X-RAY DIFFRACTION / Resolution: 1.973 Å

PDB-8pxg:
Structure of Streptactin, solved at wavelength 2.75 A
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-8pxh:
Structure of TauA from E. coli, solved at wavelength 2.375 A
Method: X-RAY DIFFRACTION / Resolution: 1.77 Å

PDB-8pxj:
Structure of Whitewater Arroyo virus GP1 glycoprotein, solved at wavelength 2.75 A
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

PDB-8pxk:
Structure of NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4, solved at wavelength 5.76 A
Method: X-RAY DIFFRACTION / Resolution: 3.77 Å

PDB-8pxl:
Structure of NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4, solved at wavelength 1.37 A
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-8pyv:
Structure of Human PS-1 GSH-analog complex, solved at wavelength 2.755 A
Method: X-RAY DIFFRACTION / Resolution: 1.77 Å

PDB-8pyz:
Structure of Ompk36GD from Klebsiella pneumonia, solved at wavelength 4.13 A
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-8pz4:
Structure of alginate transporter, AlgE, solved at wavelength 2.755 A
Method: X-RAY DIFFRACTION / Resolution: 1.77 Å

PDB-8pz5:
Structure of ThcOx, solved at wavelength 3.099 A
Method: X-RAY DIFFRACTION / Resolution: 3.2 Å

Chemicals

ChemComp-TEP:
THEOPHYLLINE / Theophylline

ChemComp-OLA:
OLEIC ACID / Oleic acid

ChemComp-CLR:
CHOLESTEROL / Cholesterol

ChemComp-HOH:
WATER / Water

ChemComp-0U:
L-URIDINE-5'-MONOPHOSPHATE / Uridine monophosphate

ChemComp-MG:
Unknown entry

ChemComp-ANP:
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / AMP-PNP, energy-carrying molecule analogue*YM

ChemComp-CA:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL / Ethylene glycol

ChemComp-CL:
Unknown entry / Chloride

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-TAU:
2-AMINOETHANESULFONIC ACID / Taurine

ChemComp-IOD:
IODIDE ION / Iodide

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose / N-Acetylglucosamine

ChemComp-CD:
Unknown entry

ChemComp-SO4:
SULFATE ION / Sulfate

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM / Flavin adenine dinucleotide

ChemComp-FMT:
FORMIC ACID / Formic acid

ChemComp-PLM:
PALMITIC ACID / Palmitic acid

ChemComp-48T:
L-gamma-glutamyl-S-(2-biphenyl-4-yl-2-oxoethyl)-L-cysteinylglycine

ChemComp-C8E:
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE / C8E, detergent*YM

ChemComp-LDA:
LAURYL DIMETHYLAMINE-N-OXIDE / LDAO, detergent*YM / Lauryldimethylamine oxide

ChemComp-FLC:
CITRATE ANION / Citric acid

ChemComp-78M:
(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE

ChemComp-78N:
(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE

ChemComp-PE5:
3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL / precipitant*YM / Polyethylene glycol

ChemComp-FMN:
FLAVIN MONONUCLEOTIDE / Flavin mononucleotide

Source
  • homo sapiens (human)
  • escherichia coli (E. coli)
  • bos taurus (cattle)
  • salmonella enterica subsp. enterica serovar typhimurium (bacteria)
  • leptospira interrogans serovar copenhageni (bacteria)
  • schizosaccharomyces pombe 972h- (yeast)
  • escherichia coli k-12 (bacteria)
  • streptococcus oralis (bacteria)
  • streptomyces avidinii (bacteria)
  • mammarenavirus whitewaterense
  • pseudomonas sp. kks102 (bacteria)
  • klebsiella pneumoniae (bacteria)
  • pseudomonas aeruginosa (bacteria)
  • cyanothece sp. pcc 7425 (bacteria)
KeywordsMEMBRANE PROTEIN / RNAse A / TOXIN / Salmonella -secreted effector SseK3 / UNKNOWN FUNCTION / GGDEF family protein / TRANSCRIPTION / RRM / RNA binding protein / efflux pump / ABC transporter / CELL ADHESION / Sec-dependent serine-rich glycoprotein adhesin / PEPTIDE BINDING PROTEIN / Engineered streptavidin / TRANSPORT PROTEIN / aurine ABC transporter substrate binding protein TauA / VIRAL PROTEIN / glycoprotein / OXIDOREDUCTASE / BPHA4 / IMMUNE SYSTEM / carbapenemase / transporter / oxidase

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