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Structure paper

TitleCrystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Journal, issue, pagesNucleic Acids Res., Year 2020
Publish dateApr 6, 2020 (structure data deposition date)
AuthorsHuang, L. / Liao, T.W. / Wang, J. / Ha, T. / Lilley, D.M.J.
External linksNucleic Acids Res. / PubMed:32520325
MethodsX-ray diffraction
Resolution1.7 - 2.5 Å
Structure data

PDB-6yl5:
Crystal structure of the SAM-SAH riboswitch with SAH
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-6ylb:
Crystal structure of the SAM-SAH riboswitch with SAM
Method: X-RAY DIFFRACTION / Resolution: 2.12 Å

PDB-6ymi:
Crystal structure of the SAM-SAH riboswitch with AMP.
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-6ymj:
Crystal structure of the SAM-SAH riboswitch with adenosine.
Method: X-RAY DIFFRACTION / Resolution: 2.04 Å

PDB-6ymk:
Crystal structure of the SAM-SAH riboswitch with AMP
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-6yml:
Crystal structure of the SAM-SAH riboswitch with decarboxylated SAH
Method: X-RAY DIFFRACTION / Resolution: 2.17 Å

PDB-6ymm:
Crystal structure of the SAM-SAH riboswitch with SAM from space group P312
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-SAH:
S-ADENOSYL-L-HOMOCYSTEINE

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-SAM:
S-ADENOSYLMETHIONINE

ChemComp-CBV:
5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

ChemComp-ADN:
ADENOSINE

ChemComp-MTA:
5'-DEOXY-5'-METHYLTHIOADENOSINE

ChemComp-DSH:
5'-S-(3-aminopropyl)-5'-thioadenosine

Source
  • roseobacter sp. (bacteria)
KeywordsRNA / Pseudoknot; SAM; Riboswitch

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