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Structure paper

TitleStructural basis for membrane binding by coagulation factors V and VIII and their specificity for phosphatidylserine-containing membranes.
Journal, issue, pagesProc Natl Acad Sci U S A, Vol. 123, Issue 36, Page e2622255123, Year 2026
Publish dateSep 8, 2026
AuthorsVladimir N Kolyadko / Ruth A Pumroy / Vera Y Moiseenkova-Bell / Sriram Krishnaswamy /
PubMed AbstractPhosphatidylserine on the surface of activated cells serves as a signal for coagulation factor binding and the membrane-dependent assembly of enzyme complexes that drive the accelerated host response ...Phosphatidylserine on the surface of activated cells serves as a signal for coagulation factor binding and the membrane-dependent assembly of enzyme complexes that drive the accelerated host response to vascular damage. Here, we use single-particle cryo-EM of liposome-bound proteins to establish common mechanisms utilized by coagulation factors V and VIII for membrane binding and phospholipid specificity. The interface between these peripheral proteins and the membrane shows contacts between the discoidin C1 and C2 domains and the interfacial phospholipid headgroup region of the membrane bilayer. There is no evidence for the insertion of membrane-contacting protein loops into the membrane core. This refutes previous models of high affinity protein binding by insertion into the hydrophobic core of the membrane. We also resolve density for the headgroup of phosphatidylserine bound to conserved pockets within the C1 and C2 domains. These single binding pockets in each C domain highlight the network of putative hydrogen bonds that contribute to binding specificity for phosphatidylserine. Our results now provide a high-resolution structural view of the protein-membrane interface for these coagulation proteins and highlight the utility of using liposomes as near-physiologic membrane mimetics in structural studies. The principles established in this work may also apply to other biological systems wherein function is regulated by reversible membrane binding.
External linksProc Natl Acad Sci U S A / PubMed:42685075 / PubMed Central
MethodsEM (single particle)
Resolution2.9 - 3.4 Å
Structure data

EMDB-77608, PDB-36ja:
Coagulation factor V DTQQ (B-domain region 811-1491 truncated, R709Q, R1545Q) in solution-phase
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-77609, PDB-36jb:
Coagulation factor V DTQQ, membrane-bound, on Ptd-choline : Ptd-serine 75:25 vesicles
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-77610, PDB-36jk:
Coagulation factor VIII, full-length, in solution-phase
Method: EM (single particle) / Resolution: 3.26 Å

EMDB-77611, PDB-36jl:
Coagulation factor VIII, full-length, membrane-bound, on Ptd-choline : Ptd-serine 75:25 vesicles
Method: EM (single particle) / Resolution: 3.15 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-CA:
Unknown entry

ChemComp-CU1:
COPPER (I) ION

ChemComp-SEP:
PHOSPHOSERINE

ChemComp-HOH:
WATER

ChemComp-CPS:
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE / detergent*YM

Source
  • homo sapiens (human)
KeywordsBLOOD CLOTTING / coagulation factor V / proteinase cofactor / discoidin / solution-phase / MEMBRANE PROTEIN / phosphatidylserine / peripheral membrane protein / liposome / coagulation factor VIII

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